ENSGALG00000019622


Gallus gallus

Features
Gene ID: ENSGALG00000019622
  
Biological name :TRIM71
  
Synonyms : E3 ubiquitin-protein ligase TRIM71 / TRIM71
  
Possible biological names infered from orthology : Q1PSW8 / Q2Q1W2 / tripartite motif containing 71
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 40677658
Gene end: 40726319
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000030515
NCBI entrez gene - 428445     See in Manteia.
RefSeq - NM_001037275
RefSeq Peptide - NP_001032352
swissprot - Z4YJC3
Ensembl - ENSGALG00000019622
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 E7FAM5ENSDARG00000075593Danio rerio
 Q2Q1W2ENSG00000206557Homo sapiens
 Q1PSW8ENSMUSG00000079259Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRIM3 / tripartite motif containing 3 / O75382* / Q9R1R2*ENSGALG0000003400427
TRIM2 / tripartite motif containing 2 / Q9C040* / Q9ESN6*ENSGALG0000000920725
TRIM33 / tripartite motif containing 33 / Q9UPN9*ENSGALG0000000197615
TRIM66 / tripartite motif containing 66 / O15016* / Q924W6*ENSGALG0000000595814
TRIM24 / tripartite motif containing 24 / O15164* / Q64127* / Transcription intermediary factor 1-alpha *ENSGALG0000001282313
TRIM45 / tripartite motif containing 45 / Q6PFY8* / Q9H8W5* / Tripartite motif-containing protein 45 *ENSGALG0000001481812


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001258  NHL repeat
 IPR001298  Filamin/ABP280 repeat
 IPR001841  Zinc finger, RING-type
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013017  NHL repeat, subgroup
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR017868  Filamin/ABP280 repeat-like
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000082 G1/S transition of mitotic cell cycle IEA
 biological_processGO:0001843 neural tube closure IEA
 biological_processGO:0008543 fibroblast growth factor receptor signaling pathway IEA
 biological_processGO:0010586 miRNA metabolic process IEA
 biological_processGO:0010608 posttranscriptional regulation of gene expression IEA
 biological_processGO:0017148 negative regulation of translation IEA
 biological_processGO:0021915 neural tube development IEA
 biological_processGO:0035196 production of miRNAs involved in gene silencing by miRNA IEA
 biological_processGO:0035278 miRNA mediated inhibition of translation IEA
 biological_processGO:0051246 regulation of protein metabolic process IEA
 biological_processGO:0051865 protein autoubiquitination IEA
 biological_processGO:0060964 regulation of gene silencing by miRNA IEA
 biological_processGO:0061158 3"-UTR-mediated mRNA destabilization IEA
 biological_processGO:0071310 cellular response to organic substance IEA
 biological_processGO:0072089 stem cell proliferation IEA
 biological_processGO:2000177 regulation of neural precursor cell proliferation IEA
 biological_processGO:2000637 positive regulation of gene silencing by miRNA IEA
 cellular_componentGO:0000932 P-body IEA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0030371 translation repressor activity IEA
 molecular_functionGO:0035198 miRNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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