ENSDARG00000075593


Danio rerio

Features
Gene ID: ENSDARG00000075593
  
Biological name :trim71
  
Synonyms : E7FAM5 / trim71 / tripartite motif containing 71, E3 ubiquitin protein ligase
  
Possible biological names infered from orthology : Q1PSW8 / Q2Q1W2 / tripartite motif containing 71
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 7742658
Gene end: 7793457
  
Corresponding Affymetrix probe sets: Dr.10519.1.A1_at (Zebrafish Array)   Dr.12236.1.A1_at (Zebrafish Array)   Dr.1691.13.S1_at (Zebrafish Array)   Dr.25667.1.A1_at (Zebrafish Array)   Dr.341.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000101787
NCBI entrez gene - 561754     See in Manteia.
RefSeq - NM_001301331
RefSeq Peptide - NP_001288260
swissprot - E7FAM5
ZFIN ID - ZDB-GENE-040128-1
Ensembl - ENSDARG00000075593
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIM71ENSGALG00000019622Gallus gallus
 Q2Q1W2ENSG00000206557Homo sapiens
 Q1PSW8ENSMUSG00000079259Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trim2a / tripartite motif containing 2a / TRIM2* / Q9ESN6* / Q9C040* / tripartite motif containing 2*ENSDARG0000003181728
trim3b / tripartite motif containing 3b / TRIM3* / Q9R1R2* / O75382* / tripartite motif containing 3*ENSDARG0000000539728
trim3a / tripartite motif containing 3a / TRIM3* / Q9R1R2* / O75382* / tripartite motif containing 3*ENSDARG0000006371128
trim2b / tripartite motif containing 2b / TRIM2* / Q9ESN6* / Q9C040* / tripartite motif containing 2*ENSDARG0000007617422
trim45 / tripartite motif containing 45 / Q6PFY8* / Q9H8W5* / Tripartite motif-containing protein 45 *ENSDARG0000007678115
trim24 / tripartite motif containing 24ENSDARG0000010335015
trim33 / tripartite motif containing 33 / Q9UPN9*ENSDARG0000001618115
trim33l / tripartite motif containing 33, likeENSDARG0000008612613
trim66 / tripartite motif containing 66 / O15016* / Q924W6*ENSDARG0000005433211


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001258  NHL repeat
 IPR001298  Filamin/ABP280 repeat
 IPR001841  Zinc finger, RING-type
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013017  NHL repeat, subgroup
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR017868  Filamin/ABP280 repeat-like
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000082 G1/S transition of mitotic cell cycle ISS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0008543 fibroblast growth factor receptor signaling pathway ISS
 biological_processGO:0010172 embryonic body morphogenesis IMP
 biological_processGO:0010586 miRNA metabolic process ISS
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0021915 neural tube development ISS
 biological_processGO:0031047 gene silencing by RNA IEA
 biological_processGO:0035278 miRNA mediated inhibition of translation ISS
 biological_processGO:0051865 protein autoubiquitination ISS
 biological_processGO:0060964 regulation of gene silencing by miRNA ISS
 biological_processGO:0072089 stem cell proliferation ISS
 biological_processGO:2000177 regulation of neural precursor cell proliferation ISS
 cellular_componentGO:0000932 P-body ISS
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity ISS
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0035198 miRNA binding ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000084 yolk yolk shape , abnormal
Show

 ZFA:0001115 trunk trunk decreased length , abnormal
Show

 ZFA:0001117 post-vent region post-vent region malformed , abnormal
post-vent region sigmoid , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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