ENSDARG00000063711


Danio rerio

Features
Gene ID: ENSDARG00000063711
  
Biological name :trim3a
  
Synonyms : trim3a / tripartite motif containing 3a
  
Possible biological names infered from orthology : O75382 / Q9R1R2 / TRIM3 / tripartite motif containing 3
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 32297441
Gene end: 32353828
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000127688
NCBI entrez gene - 562489     See in Manteia.
swissprot - E7F1U3
ZFIN ID - ZDB-GENE-080522-4
Ensembl - ENSDARG00000063711
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIM3ENSGALG00000034004Gallus gallus
 TRIM3ENSG00000110171Homo sapiens
 Trim3ENSMUSG00000036989Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trim3b / tripartite motif containing 3b / TRIM3* / Q9R1R2* / O75382* / tripartite motif containing 3*ENSDARG0000000539784
trim2a / tripartite motif containing 2a / TRIM2* / Q9ESN6* / Q9C040* / tripartite motif containing 2*ENSDARG0000003181765
trim2b / tripartite motif containing 2b / TRIM2* / Q9ESN6* / Q9C040* / tripartite motif containing 2*ENSDARG0000007617449
trim71 / E7FAM5 / tripartite motif containing 71, E3 ubiquitin protein ligase / Q2Q1W2* / Q1PSW8* / tripartite motif containing 71*ENSDARG0000007559329
trim45 / tripartite motif containing 45 / Q6PFY8* / Q9H8W5* / Tripartite motif-containing protein 45 *ENSDARG0000007678116
trim33 / tripartite motif containing 33 / Q9UPN9*ENSDARG0000001618114
trim24 / tripartite motif containing 24ENSDARG0000010335013
trim33l / tripartite motif containing 33, likeENSDARG0000008612611
trim66 / tripartite motif containing 66 / O15016* / Q924W6*ENSDARG0000005433210


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001258  NHL repeat
 IPR001298  Filamin/ABP280 repeat
 IPR001841  Zinc finger, RING-type
 IPR003649  B-box, C-terminal
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR017868  Filamin/ABP280 repeat-like
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IDA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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