ENSDARG00000005397


Danio rerio

Features
Gene ID: ENSDARG00000005397
  
Biological name :trim3b
  
Synonyms : trim3b / tripartite motif containing 3b
  
Possible biological names infered from orthology : O75382 / Q9R1R2 / TRIM3 / tripartite motif containing 3
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 26129830
Gene end: 26179805
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000117680
Ensembl peptide - ENSDARP00000144354
NCBI entrez gene - 555391     See in Manteia.
RefSeq - NM_001080168
RefSeq Peptide - NP_001073637
swissprot - E7F959
swissprot - A0A286YB14
swissprot - F1QY41
ZFIN ID - ZDB-GENE-070112-1132
Ensembl - ENSDARG00000005397
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIM3ENSGALG00000034004Gallus gallus
 TRIM3ENSG00000110171Homo sapiens
 Trim3ENSMUSG00000036989Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trim3a / tripartite motif containing 3a / TRIM3* / Q9R1R2* / O75382* / tripartite motif containing 3*ENSDARG0000006371187
trim2a / tripartite motif containing 2a / TRIM2* / Q9ESN6* / Q9C040* / tripartite motif containing 2*ENSDARG0000003181768
trim2b / tripartite motif containing 2b / TRIM2* / Q9ESN6* / Q9C040* / tripartite motif containing 2*ENSDARG0000007617451
trim71 / E7FAM5 / tripartite motif containing 71, E3 ubiquitin protein ligase / Q2Q1W2* / Q1PSW8* / tripartite motif containing 71*ENSDARG0000007559331
trim45 / tripartite motif containing 45 / Q6PFY8* / Q9H8W5* / Tripartite motif-containing protein 45 *ENSDARG0000007678117
trim24 / tripartite motif containing 24ENSDARG0000010335015
trim33 / tripartite motif containing 33 / Q9UPN9*ENSDARG0000001618114
trim33l / tripartite motif containing 33, likeENSDARG0000008612613
trim66 / tripartite motif containing 66 / O15016* / Q924W6*ENSDARG0000005433211


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001258  NHL repeat
 IPR001298  Filamin/ABP280 repeat
 IPR001841  Zinc finger, RING-type
 IPR003649  B-box, C-terminal
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013017  NHL repeat, subgroup
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR017868  Filamin/ABP280 repeat-like
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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