ENSGALG00000034004


Gallus gallus

Features
Gene ID: ENSGALG00000034004
  
Biological name :TRIM3
  
Synonyms : TRIM3 / tripartite motif containing 3
  
Possible biological names infered from orthology : O75382 / Q9R1R2
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 194432359
Gene end: 194438661
  
Corresponding Affymetrix probe sets: Gga.6020.1.S1_at (Chicken Array)   Gga.6020.1.S1_s_at (Chicken Array)   Gga.6020.2.S1_at (Chicken Array)   Gga.6020.2.S1_x_at (Chicken Array)   GgaAffx.25853.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000056262
NCBI entrez gene - 425131     See in Manteia.
RefSeq - XM_004938964
RefSeq - XM_422922
RefSeq - XM_015280927
RefSeq - XM_015280928
swissprot - A0A1D5PTL4
Ensembl - ENSGALG00000034004
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trim3aENSDARG00000063711Danio rerio
 trim3bENSDARG00000005397Danio rerio
 TRIM3ENSG00000110171Homo sapiens
 Trim3ENSMUSG00000036989Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRIM2 / tripartite motif containing 2 / Q9C040* / Q9ESN6*ENSGALG0000000920770
TRIM71 / E3 ubiquitin-protein ligase TRIM71 / Q1PSW8* / Q2Q1W2* / tripartite motif containing 71*ENSGALG0000001962232
TRIM33 / tripartite motif containing 33 / Q9UPN9*ENSGALG0000000197617
TRIM45 / tripartite motif containing 45 / Q6PFY8* / Q9H8W5* / Tripartite motif-containing protein 45 *ENSGALG0000001481815
TRIM24 / tripartite motif containing 24 / O15164* / Q64127* / Transcription intermediary factor 1-alpha *ENSGALG0000001282315
TRIM66 / tripartite motif containing 66 / O15016* / Q924W6*ENSGALG0000000595814


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001258  NHL repeat
 IPR001298  Filamin/ABP280 repeat
 IPR001841  Zinc finger, RING-type
 IPR003649  B-box, C-terminal
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013017  NHL repeat, subgroup
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR017868  Filamin/ABP280 repeat-like
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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