ENSDARG00000031817


Danio rerio

Features
Gene ID: ENSDARG00000031817
  
Biological name :trim2a
  
Synonyms : trim2a / tripartite motif containing 2a
  
Possible biological names infered from orthology : Q9C040 / Q9ESN6 / TRIM2 / tripartite motif containing 2
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 25322445
Gene end: 25370281
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000050444
NCBI entrez gene - 100003782     See in Manteia.
RefSeq - NM_001014371
RefSeq Peptide - NP_001014393
swissprot - F1QFW2
ZFIN ID - ZDB-GENE-050327-99
Ensembl - ENSDARG00000031817
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIM2ENSGALG00000009207Gallus gallus
 TRIM2ENSG00000109654Homo sapiens
 Trim2ENSMUSG00000027993Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trim3b / tripartite motif containing 3b / TRIM3* / Q9R1R2* / O75382* / tripartite motif containing 3*ENSDARG0000000539769
trim3a / tripartite motif containing 3a / TRIM3* / Q9R1R2* / O75382* / tripartite motif containing 3*ENSDARG0000006371168
trim2b / tripartite motif containing 2b / TRIM2* / Q9ESN6* / Q9C040* / tripartite motif containing 2*ENSDARG0000007617460
trim71 / E7FAM5 / tripartite motif containing 71, E3 ubiquitin protein ligase / Q2Q1W2* / Q1PSW8* / tripartite motif containing 71*ENSDARG0000007559331
trim45 / tripartite motif containing 45 / Q6PFY8* / Q9H8W5* / Tripartite motif-containing protein 45 *ENSDARG0000007678117
trim33 / tripartite motif containing 33 / Q9UPN9*ENSDARG0000001618116
trim24 / tripartite motif containing 24ENSDARG0000010335014
trim33l / tripartite motif containing 33, likeENSDARG0000008612613
trim66 / tripartite motif containing 66 / O15016* / Q924W6*ENSDARG0000005433211


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001258  NHL repeat
 IPR001298  Filamin/ABP280 repeat
 IPR001841  Zinc finger, RING-type
 IPR003649  B-box, C-terminal
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013017  NHL repeat, subgroup
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR017868  Filamin/ABP280 repeat-like
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030099 myeloid cell differentiation IMP
 biological_processGO:0060215 primitive hemopoiesis IMP
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
Show

 ZFA:0009324 myeloid cell myeloid cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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