ENSG00000119655


Homo sapiens

Features
Gene ID: ENSG00000119655
  
Biological name :NPC2
  
Synonyms : NPC2 / NPC intracellular cholesterol transporter 2 / P61916
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: -1
Band: q24.3
Gene start: 74476192
Gene end: 74494177
  
Corresponding Affymetrix probe sets: 200701_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000451112
Ensembl peptide - ENSP00000451314
Ensembl peptide - ENSP00000451206
Ensembl peptide - ENSP00000451180
Ensembl peptide - ENSP00000238633
Ensembl peptide - ENSP00000412103
Ensembl peptide - ENSP00000442488
Ensembl peptide - ENSP00000450502
Ensembl peptide - ENSP00000450887
NCBI entrez gene - 10577     See in Manteia.
OMIM - 601015
RefSeq - NM_006432
RefSeq - XM_017020930
RefSeq Peptide - NP_006423
swissprot - G3V3E8
swissprot - E7EMS2
swissprot - H0YJE2
swissprot - J3KMY5
swissprot - P61916
swissprot - H0YIZ1
swissprot - A0A024R6C0
swissprot - G3V2V8
swissprot - G3V3D1
Ensembl - ENSG00000119655
  
Related genetic diseases (OMIM): 607625 - Niemann-pick disease, type C2, 607625
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 npc2ENSDARG00000090912Danio rerio
 zgc:193725ENSDARG00000096979Danio rerio
 NPC2ENSGALG00000010237Gallus gallus
 Npc2ENSMUSG00000021242Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003172  MD-2-related lipid-recognition domain
 IPR014756  Immunoglobulin E-set
 IPR033916  ML domain, Npc2 like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0008202 steroid metabolic process IEA
 biological_processGO:0008203 cholesterol metabolic process IEA
 biological_processGO:0009615 response to virus IEP
 biological_processGO:0015914 phospholipid transport TAS
 biological_processGO:0019747 regulation of isoprenoid metabolic process TAS
 biological_processGO:0030301 cholesterol transport IDA
 biological_processGO:0032366 intracellular sterol transport IDA
 biological_processGO:0032367 intracellular cholesterol transport IEA
 biological_processGO:0033344 cholesterol efflux IDA
 biological_processGO:0034383 low-density lipoprotein particle clearance TAS
 biological_processGO:0042632 cholesterol homeostasis IDA
 biological_processGO:0043312 neutrophil degranulation TAS
 biological_processGO:0046836 glycolipid transport TAS
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005764 lysosome IDA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0035578 azurophil granule lumen TAS
 cellular_componentGO:0043202 lysosomal lumen TAS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0015485 cholesterol binding IDA
 molecular_functionGO:0017127 cholesterol transporter activity IDA
 molecular_functionGO:0019899 enzyme binding IPI


Pathways (from Reactome)
Pathway description
Neutrophil degranulation
LDL clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000511 Vertical supranuclear gaze palsy 
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000726 Dementia 
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 HP:0000733 Stereotyped, repetitive behaviour 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001791 Fetal ascites 
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 HP:0001982 Sea-blue histiocytes 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002093 Respiratory insufficiency 
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 HP:0002185 Neurofibrillary tangles 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002371 Loss of speech 
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 HP:0002524 Cataplexy 
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 HP:0002878 Early respiratory failure 
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 HP:0003349 Low cholesterol esterification rates 
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 HP:0003464 Abnormal cholesterol homeostasis 
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 HP:0003640 Foam cells in visceral organs and CNS 
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 HP:0003674 Age of onset 
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 HP:0004333 Foam cells on bone marrow biopsy 
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 HP:0006579 Prolonged neonatal jaundice 
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 HP:0030223 Perseveration "Perseveration can be defined as the contextually inappropriate and unintentional repetition of a response or behavioral unit. In other words, the observed repetitiveness does not meet the demands of the situation, is not the product of deliberation, and may even unfold despite counterintention. Perseveration can therefore be differentiated from goal-directed and intentional forms of repetition, such as linguistic redundancies designed to enhance communicative or poetic impact." [HPO:probinson, pmid:9050113]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000141458 NPC1 / O15118 / NPC intracellular cholesterol transporter 1  / reaction






 

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