ENSG00000141458


Homo sapiens

Features
Gene ID: ENSG00000141458
  
Biological name :NPC1
  
Synonyms : NPC1 / NPC intracellular cholesterol transporter 1 / O15118
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 18
Strand: -1
Band: q11.2
Gene start: 23506184
Gene end: 23586898
  
Corresponding Affymetrix probe sets: 202679_at (Human Genome U133 Plus 2.0 Array)   217584_at (Human Genome U133 Plus 2.0 Array)   238568_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000468438
Ensembl peptide - ENSP00000467636
Ensembl peptide - ENSP00000468321
Ensembl peptide - ENSP00000269228
Ensembl peptide - ENSP00000464755
Ensembl peptide - ENSP00000467150
NCBI entrez gene - 4864     See in Manteia.
OMIM - 607623
RefSeq - XM_017025787
RefSeq - XM_005258278
RefSeq - XM_005258279
RefSeq - XM_006722479
RefSeq - XM_011526015
RefSeq - XM_017025784
RefSeq - XM_017025785
RefSeq - XM_017025786
RefSeq - NM_000271
RefSeq - XM_005258277
RefSeq Peptide - NP_000262
swissprot - K7EQ23
swissprot - K7ERM4
swissprot - K7ENZ0
swissprot - K7EIH7
swissprot - O15118
swissprot - K7ERW2
Ensembl - ENSG00000141458
  
Related genetic diseases (OMIM): 257220 - Niemann-Pick disease, type C1, 257220
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 npc1ENSDARG00000017180Danio rerio
 NPC1ENSGALG00000015030Gallus gallus
 Npc1ENSMUSG00000024413Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NPC1L1 / Q9UHC9 / NPC1 like intracellular cholesterol transporter 1ENSG0000001552040
PTCH1 / Q13635 / patched 1ENSG0000018592020
PTCH2 / Q9Y6C5 / patched 2ENSG0000011742519
PTCHD3 / Q3KNS1 / patched domain containing 3ENSG0000018207711
PTCHD1 / Q96NR3 / patched domain containing 1ENSG0000016518611
PTCHD4 / Q6ZW05 / patched domain containing 4ENSG0000024469410


Protein motifs (from Interpro)
Interpro ID Name
 IPR000731  Sterol-sensing domain
 IPR003392  Protein patched/dispatched
 IPR004765  NPC1-like
 IPR032190  Niemann-Pick C1, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006486 protein glycosylation IEA
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006869 lipid transport IEA
 biological_processGO:0006897 endocytosis IEA
 biological_processGO:0006914 autophagy IGI
 biological_processGO:0007041 lysosomal transport ISS
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007628 adult walking behavior IEA
 biological_processGO:0008202 steroid metabolic process IEA
 biological_processGO:0008203 cholesterol metabolic process IEA
 biological_processGO:0008206 bile acid metabolic process ISS
 biological_processGO:0016032 viral process IEA
 biological_processGO:0016242 negative regulation of macroautophagy IEA
 biological_processGO:0030301 cholesterol transport IDA
 biological_processGO:0031579 membrane raft organization IMP
 biological_processGO:0033344 cholesterol efflux IDA
 biological_processGO:0034383 low-density lipoprotein particle clearance TAS
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0042632 cholesterol homeostasis ISS
 biological_processGO:0046686 response to cadmium ion IEA
 biological_processGO:0046718 viral entry into host cell IMP
 biological_processGO:0060548 negative regulation of cell death IEA
 biological_processGO:0071383 cellular response to steroid hormone stimulus IEA
 biological_processGO:0071404 cellular response to low-density lipoprotein particle stimulus IEA
 biological_processGO:0090150 establishment of protein localization to membrane IDA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0005764 lysosome TAS
 cellular_componentGO:0005765 lysosomal membrane TAS
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031902 late endosome membrane IEA
 cellular_componentGO:0031982 vesicle IEA
 cellular_componentGO:0045121 membrane raft IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0001618 virus receptor activity IEA
 molecular_functionGO:0004888 transmembrane signaling receptor activity TAS
 molecular_functionGO:0005319 lipid transporter activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0015248 sterol transporter activity TAS
 molecular_functionGO:0015485 cholesterol binding IDA


Pathways (from Reactome)
Pathway description
LDL clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000511 Vertical supranuclear gaze palsy 
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000726 Dementia 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001791 Fetal ascites 
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 HP:0001982 Sea-blue histiocytes 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002185 Neurofibrillary tangles 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002371 Loss of speech 
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 HP:0002524 Cataplexy 
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 HP:0002529 Neuropathology shows neuronal loss in basal ganglia, brainstem, and cerebellum 
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 HP:0003349 Low cholesterol esterification rates 
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 HP:0003464 Abnormal cholesterol homeostasis 
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 HP:0003640 Foam cells in visceral organs and CNS 
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 HP:0003674 Age of onset 
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 HP:0003812 Phenotypic variability 
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 HP:0004333 Foam cells on bone marrow biopsy 
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 HP:0006579 Prolonged neonatal jaundice 
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 HP:0006583 Fatal liver failure in infancy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000119655 NPC2 / P61916 / NPC intracellular cholesterol transporter 2  / reaction






 

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