ENSG00000117425


Homo sapiens

Features
Gene ID: ENSG00000117425
  
Biological name :PTCH2
  
Synonyms : patched 2 / PTCH2 / Q9Y6C5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p34.1
Gene start: 44819844
Gene end: 44843063
  
Corresponding Affymetrix probe sets: 221292_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000389703
Ensembl peptide - ENSP00000361266
Ensembl peptide - ENSP00000413169
NCBI entrez gene - 8643     See in Manteia.
OMIM - 603673
RefSeq - NM_003738
RefSeq - NM_001166292
RefSeq Peptide - NP_001159764
RefSeq Peptide - NP_003729
swissprot - Q9Y6C5
swissprot - H0Y7J2
Ensembl - ENSG00000117425
  
Related genetic diseases (OMIM): 109400 - Basal cell nevus syndrome, 109400
  155255 - Medulloblastoma, somatic, 155255
  605462 - Basal cell carcinoma, somatic, 605462
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ptch2ENSDARG00000055026Danio rerio
 PTCH2ENSGALG00000010133Gallus gallus
 2 ENSMUSG00000028681Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PTCH1 / Q13635 / patched 1ENSG0000018592055
NPC1L1 / Q9UHC9 / NPC1 like intracellular cholesterol transporter 1ENSG0000001552020
NPC1 / O15118 / NPC intracellular cholesterol transporter 1ENSG0000014145820
PTCHD1 / Q96NR3 / patched domain containing 1ENSG0000016518612
PTCHD4 / Q6ZW05 / patched domain containing 4ENSG0000024469411
PTCHD3 / Q3KNS1 / patched domain containing 3ENSG0000018207711


Protein motifs (from Interpro)
Interpro ID Name
 IPR000731  Sterol-sensing domain
 IPR003392  Protein patched/dispatched
 IPR004766  Transmembrane receptor, patched


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001709 cell fate determination IEA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0008544 epidermis development IEA
 biological_processGO:0009957 epidermal cell fate specification IEA
 biological_processGO:0042633 hair cycle IEA
 biological_processGO:0043588 skin development IEA
 biological_processGO:0045606 positive regulation of epidermal cell differentiation IEA
 biological_processGO:0045879 negative regulation of smoothened signaling pathway TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005119 smoothened binding IPI
 molecular_functionGO:0008158 hedgehog receptor activity TAS
 molecular_functionGO:0097108 hedgehog family protein binding TAS


Pathways (from Reactome)
Pathway description
Class B/2 (Secretin family receptors)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000044 Hypogonadotrophic hypogonadism "Hypogonadotropic hypogonadism is characterized by reduced function of the gonads (testes in males or ovaries in females) and results from the absence of the gonadal stimulating pituitary hormones: follicle stimulating hormone (FSH) and luteinizing hormone (LH)." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000238 Hydrocephalus 
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 HP:0000242 Parietal bossing "Parietal bossing is an unusual prominence in the parietal region." [HPO:curators]
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000280 Coarse facial features 
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 HP:0000283 Broad face 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000464 Abnormality of the neck 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0000670 Carious teeth 
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 HP:0000766 Abnormality of the sternum 
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 HP:0000773 Short ribs 
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 HP:0000892 Bifid ribs "A bifid rib refers to cleavage of the sternal end of a rib, usually unilateral. Bifid ribs are usually asymptomatic, and are often discovered incidentally by chest x-ray." [HPO:curators]
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 HP:0000912 Sprengel anomaly "A complex deformity characterized by congenital elevation of the scapula." [HPO:curators]
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 HP:0000995 Pigmented nevi "The presence of increased numbers of pigmented nevi, that is, of small, dark spots on the skin. Pigmented nevi are also known as melanocytic nevi or moles." [HPO:curators]
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 HP:0001056 Milia 
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 HP:0001144 Orbital cysts "Presence of cysts in the region of teh orbita. Orbital cysts can be derived from epithelial or glandular tissue within or surrounding the orbit (lacrimal glands, salivary glands, conjunctival, oral, nasal, or sinus epithelium)." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001166 Arachnodactyly "Abnormally long and slender fingers ("spider fingers")." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001270 Motor retardation 
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 HP:0001425 Heterogeneous 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002414 Spina bifida "Incomplete closure of the embryonic neural tube, whereby some vertebral arches remain unfused and open." [HPO:curators]
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 HP:0002514 Cerebral calcification "The presence of calcification within brain structures." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002664 Neoplasia "An organ or organ-system abnormality that consists of uncontrolled autonomous cell-proliferation which can occur in any part of the body as a benign or malignant tumour or neoplasm." [HPO:curators]
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 HP:0002671 Basal cell carcinoma 
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 HP:0002751 Kyphoscoliosis 
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 HP:0002885 Medulloblastoma 
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 HP:0002937 Hemivertebrae 
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 HP:0002948 Vertebral fusion "A developmental defect leading to the union of two adjacent vertebrae." [HPO:curators]
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 HP:0003828 Variable expressivity 
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 HP:0003829 Incomplete penetrance 
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 HP:0004280 Irregular ossification of hand bones 
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 HP:0004408 Abnormality of the sense of smell 
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 HP:0004795 hamartomatous stomach polyps 
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 HP:0005449 Bridged sella turcica 
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 HP:0005462 Calcification of falx cerebri 
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 HP:0005815 Supernumerary ribs 
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 HP:0008422 Wedge-shaped vertebrae 
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 HP:0009650 Hypoplastic/small distal phalanx of the thumb "Hypoplastic/small distal/terminal phalanx of the thumb." [HPO:curators]
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 HP:0009729 Cardiac rhabdomyoma "A benign tumor of cardiac striated muscle." [HPO:curators]
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 HP:0010044 Hypoplastic/short 4th metacarpal 
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 HP:0010442 Polydactyly 
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 HP:0010603 Keratocysts of the jaw "The term odontogenic keratocyst was introduced in 1956 to describe cysts of the jaw exhibiting keratinization of their lining. Periodontal, dentigerous, primordial, residual, and gingival cysts may exhibit keratinized linings and can properly be identified as odontogenic keratocysts on the basis of their histologic appearance but may also be identified by their "developmental" designation. There is no justification for considering the term odontogenic keratocyst as a synonym for primordial cyst, a term that was introduced in 1945 to identify the odontogenic cyst formed from enamel organ before calcification occurred as part of a classification based on development, structure, and radiographic appearance." [HPO:curators]
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 HP:0010609 Skin tags 
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 HP:0010610 Palmar pits 
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 HP:0010612 Plantar pits 
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 HP:0010617 Cardiac fibroma 
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 HP:0010618 Ovarian fibroma "Ovarion fibroma belong to the sex cord-stromal tumour group of ovarian neoplasms. Ovary fibromas are most frequent during middle age, and rare in children. Upon gross pathological inspection, ovary fibromas are firm and white or tan." [HPO:curators]
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 HP:0025318 Ovarian carcinoma "A malignant neoplasm originating from the surface ovarian epithelium." []
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 HP:0200021 Rounded shoulders 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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