ENSG00000185920


Homo sapiens

Features
Gene ID: ENSG00000185920
  
Biological name :PTCH1
  
Synonyms : patched 1 / PTCH1 / Q13635
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: q22.32
Gene start: 95442980
Gene end: 95517057
  
Corresponding Affymetrix probe sets: 1555520_at (Human Genome U133 Plus 2.0 Array)   208522_s_at (Human Genome U133 Plus 2.0 Array)   209815_at (Human Genome U133 Plus 2.0 Array)   209816_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000449745
Ensembl peptide - ENSP00000450131
Ensembl peptide - ENSP00000449078
Ensembl peptide - ENSP00000450047
Ensembl peptide - ENSP00000332353
Ensembl peptide - ENSP00000364420
Ensembl peptide - ENSP00000364423
Ensembl peptide - ENSP00000364439
Ensembl peptide - ENSP00000389744
Ensembl peptide - ENSP00000396135
Ensembl peptide - ENSP00000399981
Ensembl peptide - ENSP00000410287
Ensembl peptide - ENSP00000414823
Ensembl peptide - ENSP00000447008
Ensembl peptide - ENSP00000447242
Ensembl peptide - ENSP00000447797
Ensembl peptide - ENSP00000447878
Ensembl peptide - ENSP00000448843
NCBI entrez gene - 5727     See in Manteia.
OMIM - 601309
RefSeq - NM_001083602
RefSeq - NM_001354919
RefSeq - NM_001083607
RefSeq - NM_001083606
RefSeq - NM_001083605
RefSeq - NM_001083604
RefSeq - NM_001083603
RefSeq - NM_000264
RefSeq Peptide - NP_001077073
RefSeq Peptide - NP_000255
RefSeq Peptide - NP_001077071
RefSeq Peptide - NP_001077072
RefSeq Peptide - NP_001077074
RefSeq Peptide - NP_001077075
RefSeq Peptide - NP_001077076
RefSeq Peptide - NP_001341848
swissprot - Q13635
swissprot - A0A0C4DGI4
swissprot - H3BLX7
swissprot - H0YHK0
swissprot - H0Y3B8
swissprot - F8VXL8
swissprot - F8VQS6
swissprot - F8VPA3
swissprot - A0A0C4DGJ5
Ensembl - ENSG00000185920
  
Related genetic diseases (OMIM): 109400 - Basal cell nevus syndrome, 109400
  605462 - Basal cell carcinoma, somatic, 605462
  610828 - Holoprosencephaly 7, 610828
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ptch1ENSDARG00000095859Danio rerio
 ptch1ENSDARG00000016404Danio rerio
 PTCH1ENSGALG00000012620Gallus gallus
 Ptch1ENSMUSG00000021466Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PTCH2 / Q9Y6C5 / patched 2ENSG0000011742546
NPC1 / O15118 / NPC intracellular cholesterol transporter 1ENSG0000014145818
NPC1L1 / Q9UHC9 / NPC1 like intracellular cholesterol transporter 1ENSG0000001552018
PTCHD1 / Q96NR3 / patched domain containing 1ENSG0000016518610
PTCHD4 / Q6ZW05 / patched domain containing 4ENSG0000024469410
PTCHD3 / Q3KNS1 / patched domain containing 3ENSG000001820779


Protein motifs (from Interpro)
Interpro ID Name
 IPR000731  Sterol-sensing domain
 IPR003392  Protein patched/dispatched
 IPR004766  Transmembrane receptor, patched


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IMP
 biological_processGO:0001658 branching involved in ureteric bud morphogenesis IEA
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0001709 cell fate determination IEA
 biological_processGO:0001841 neural tube formation IEA
 biological_processGO:0001843 neural tube closure IEA
 biological_processGO:0003007 heart morphogenesis IEA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0007224 smoothened signaling pathway ISS
 biological_processGO:0007346 regulation of mitotic cell cycle IEA
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0007420 brain development ISS
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0008544 epidermis development IEA
 biological_processGO:0008589 regulation of smoothened signaling pathway ISS
 biological_processGO:0009612 response to mechanical stimulus IEA
 biological_processGO:0009887 animal organ morphogenesis ISS
 biological_processGO:0009953 dorsal/ventral pattern formation ISS
 biological_processGO:0009957 epidermal cell fate specification IEA
 biological_processGO:0010157 response to chlorate IEA
 biological_processGO:0010875 positive regulation of cholesterol efflux IDA
 biological_processGO:0014070 response to organic cyclic compound IEA
 biological_processGO:0016485 protein processing ISS
 biological_processGO:0021522 spinal cord motor neuron differentiation IEA
 biological_processGO:0021532 neural tube patterning IMP
 biological_processGO:0021904 dorsal/ventral neural tube patterning IEA
 biological_processGO:0021997 neural plate axis specification ISS
 biological_processGO:0030326 embryonic limb morphogenesis ISS
 biological_processGO:0030850 prostate gland development IEA
 biological_processGO:0030879 mammary gland development IEA
 biological_processGO:0032355 response to estradiol IEA
 biological_processGO:0032526 response to retinoic acid IEA
 biological_processGO:0032880 regulation of protein localization IEA
 biological_processGO:0035108 limb morphogenesis IMP
 biological_processGO:0035137 hindlimb morphogenesis IEA
 biological_processGO:0040008 regulation of growth IEA
 biological_processGO:0040015 negative regulation of multicellular organism growth ISS
 biological_processGO:0042127 regulation of cell proliferation IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0042593 glucose homeostasis IEA
 biological_processGO:0043433 negative regulation of DNA-binding transcription factor activity IMP
 biological_processGO:0043616 keratinocyte proliferation IEA
 biological_processGO:0045606 positive regulation of epidermal cell differentiation IEA
 biological_processGO:0045668 negative regulation of osteoblast differentiation IMP
 biological_processGO:0045879 negative regulation of smoothened signaling pathway TAS
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0048568 embryonic organ development IEA
 biological_processGO:0050680 negative regulation of epithelial cell proliferation IEA
 biological_processGO:0051782 negative regulation of cell division IEA
 biological_processGO:0060037 pharyngeal system development IMP
 biological_processGO:0060603 mammary gland duct morphogenesis IEA
 biological_processGO:0060644 mammary gland epithelial cell differentiation IEA
 biological_processGO:0060831 smoothened signaling pathway involved in dorsal/ventral neural tube patterning IEA
 biological_processGO:0061005 cell differentiation involved in kidney development IEA
 biological_processGO:0061053 somite development IMP
 biological_processGO:0071397 cellular response to cholesterol ISS
 biological_processGO:0071679 commissural neuron axon guidance IEA
 biological_processGO:0072001 renal system development IEP
 biological_processGO:0072203 cell proliferation involved in metanephros development IEA
 biological_processGO:0072659 protein localization to plasma membrane IDA
 biological_processGO:0097421 liver regeneration IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0005901 caveola IDA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0014069 postsynaptic density IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030496 midbody IEA
 cellular_componentGO:0030666 endocytic vesicle membrane TAS
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0044294 dendritic growth cone IEA
 cellular_componentGO:0044295 axonal growth cone IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 cellular_componentGO:0060170 ciliary membrane TAS
 molecular_functionGO:0005113 patched binding IEA
 molecular_functionGO:0005119 smoothened binding IPI
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008158 hedgehog receptor activity IEA
 molecular_functionGO:0008201 heparin binding IEA
 molecular_functionGO:0015485 cholesterol binding IDA
 molecular_functionGO:0030332 cyclin binding IPI
 molecular_functionGO:0044877 protein-containing complex binding IEA
 molecular_functionGO:0097108 hedgehog family protein binding IPI


Pathways (from Reactome)
Pathway description
Class B/2 (Secretin family receptors)
Hedgehog off state
Ligand-receptor interactions
Hedgehog on state
Activation of SMO


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000044 Hypogonadotrophic hypogonadism "Hypogonadotropic hypogonadism is characterized by reduced function of the gonads (testes in males or ovaries in females) and results from the absence of the gonadal stimulating pituitary hormones: follicle stimulating hormone (FSH) and luteinizing hormone (LH)." [HPO:curators]
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 HP:0000098 Increased body height 
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000202 Cleft lip/palate 
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000238 Hydrocephalus 
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 HP:0000242 Parietal bossing "Parietal bossing is an unusual prominence in the parietal region." [HPO:curators]
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 HP:0000243 Trigonocephaly 
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000280 Coarse facial features 
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 HP:0000283 Broad face 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000343 Long philtrum 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000437 Flat nasal tip 
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 HP:0000464 Abnormality of the neck 
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 HP:0000470 Short neck 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000488 Retinopathy 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000601 Hypotelorism 
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0000670 Carious teeth 
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 HP:0000684 Delayed dentition "Delayed eruption of teeth." [HPO:curators]
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 HP:0000752 Hyperactivity 
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 HP:0000766 Abnormality of the sternum 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000772 Abnormality of the ribs 
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 HP:0000773 Short ribs 
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 HP:0000871 Panhypopituitarism "A pituitary functional deficit affecting all the anterior pituitary hormones (growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone, luteinizing hormone, adrenocorticotropic hormone, and prolactin)." [HPO:curators]
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 HP:0000892 Bifid ribs "A bifid rib refers to cleavage of the sternal end of a rib, usually unilateral. Bifid ribs are usually asymptomatic, and are often discovered incidentally by chest x-ray." [HPO:curators]
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 HP:0000912 Sprengel anomaly "A complex deformity characterized by congenital elevation of the scapula." [HPO:curators]
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 HP:0000995 Pigmented nevi "The presence of increased numbers of pigmented nevi, that is, of small, dark spots on the skin. Pigmented nevi are also known as melanocytic nevi or moles." [HPO:curators]
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 HP:0001056 Milia 
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 HP:0001144 Orbital cysts "Presence of cysts in the region of teh orbita. Orbital cysts can be derived from epithelial or glandular tissue within or surrounding the orbit (lacrimal glands, salivary glands, conjunctival, oral, nasal, or sinus epithelium)." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001166 Arachnodactyly "Abnormally long and slender fingers ("spider fingers")." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0001520 Large for gestational age "The term large for gestational age applies to babies whose birth weight lies above the 90th percentile for that gestational age." [HPO:curators]
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001539 Omphalocele 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002308 Arnold-Chiari malformation "Arnold-Chiari malformation consists of a downward displacement of the cerebellar tonsils and the medulla through the foramen magnum, sometimes causing hydrocephalus as a result of obstruction of CSF outflow." [HPO:curators]
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 HP:0002414 Spina bifida "Incomplete closure of the embryonic neural tube, whereby some vertebral arches remain unfused and open." [HPO:curators]
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 HP:0002507 Semilobar holoprosencephaly "A type of holoprosencephaly in which the left and right frontal and parietal lobes are fused and the interhemispheric fissure is only present posteriorly." [gc:hpe]
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 HP:0002514 Cerebral calcification "The presence of calcification within brain structures." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002664 Neoplasia "An organ or organ-system abnormality that consists of uncontrolled autonomous cell-proliferation which can occur in any part of the body as a benign or malignant tumour or neoplasm." [HPO:curators]
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 HP:0002667 Nephroblastoma (Wilms tumor) "A kind of renal tumor primarily affecting children. It is characterized by an abnormal proliferation of the metanephric blastema cells, which are believed to be primitive embryologic cells of the kidney. Clinically, nephroblatoma usually presents as an abdominal mass, and in some cases with abdominal pain, hypertension, hematuria, and fever." [HPO:curators]
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 HP:0002671 Basal cell carcinoma 
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 HP:0002744 Bilateral cleft lip/palate "Cleft lip/palate affecting both sides of the face." [HPO:curators]
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 HP:0002751 Kyphoscoliosis 
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 HP:0002808 Kyphosis 
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 HP:0002859 Rhabdomyosarcoma 
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 HP:0002885 Medulloblastoma 
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 HP:0002937 Hemivertebrae 
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 HP:0002948 Vertebral fusion "A developmental defect leading to the union of two adjacent vertebrae." [HPO:curators]
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003828 Variable expressivity 
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 HP:0003829 Incomplete penetrance 
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 HP:0004122 Midline defect of the nose "This term groups together three conditions that presumably represent different degrees of severity of a midline defect of the nose or nasal tip." [HPO:curators]
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 HP:0004280 Irregular ossification of hand bones 
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 HP:0004408 Abnormality of the sense of smell 
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 HP:0004795 hamartomatous stomach polyps 
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 HP:0005273 Absent nasal septal cartilage 
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 HP:0005449 Bridged sella turcica 
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 HP:0005462 Calcification of falx cerebri 
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 HP:0005469 Occipital plagiocephaly "Occipital plagiocephaly can result from fusion or sclerosis of the lambdoid suture. If unilateral, this is accompanied by unilateral occipital flattening and bulging of the ispilateral frontal bone." [HPO:curators]
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 HP:0005616 Accelerated skeletal maturation "An abnormally increased rate of skeletal maturation. Accelerated skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0005692 Joint hyperflexibility 
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 HP:0005815 Supernumerary ribs 
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 HP:0006315 Single median maxillary central incisor "The presence of a single, centrally located maxillary `Incisor tooth` (FMA:12823) instead of the normal complement of a left and a right maxillary incisor tooth." [HPO:curators]
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 HP:0006988 Alobar holoprosencephaly "A type of holoprosencephaly characterized by the presence of a single ventricle and no separation of the cerebral hemisphere. The single midline ventricle is often greatly enlarged." [gc:hpe]
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 HP:0007633 Bilateral microphthalmos "A developmental anomaly characterized by abnormal smallness of both eyes." [HPO:curators]
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 HP:0008422 Wedge-shaped vertebrae 
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 HP:0008501 Median cleft lip/palate "Cleft lip or palate affecting the midline region of the palate." [HPO:curators]
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 HP:0009650 Hypoplastic/small distal phalanx of the thumb "Hypoplastic/small distal/terminal phalanx of the thumb." [HPO:curators]
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 HP:0009729 Cardiac rhabdomyoma "A benign tumor of cardiac striated muscle." [HPO:curators]
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 HP:0009894 Thickened ears 
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 HP:0010044 Hypoplastic/short 4th metacarpal 
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 HP:0010442 Polydactyly 
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 HP:0010603 Keratocysts of the jaw "The term odontogenic keratocyst was introduced in 1956 to describe cysts of the jaw exhibiting keratinization of their lining. Periodontal, dentigerous, primordial, residual, and gingival cysts may exhibit keratinized linings and can properly be identified as odontogenic keratocysts on the basis of their histologic appearance but may also be identified by their "developmental" designation. There is no justification for considering the term odontogenic keratocyst as a synonym for primordial cyst, a term that was introduced in 1945 to identify the odontogenic cyst formed from enamel organ before calcification occurred as part of a classification based on development, structure, and radiographic appearance." [HPO:curators]
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 HP:0010609 Skin tags 
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 HP:0010610 Palmar pits 
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 HP:0010612 Plantar pits 
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 HP:0010617 Cardiac fibroma 
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 HP:0010618 Ovarian fibroma "Ovarion fibroma belong to the sex cord-stromal tumour group of ovarian neoplasms. Ovary fibromas are most frequent during middle age, and rare in children. Upon gross pathological inspection, ovary fibromas are firm and white or tan." [HPO:curators]
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 HP:0010649 Flat nasal alae "An abnormal degree of flatness of the `Ala of nose` (FMA:59519), which can be defined as a reduced nasal elevation index (lateral depth of the nose from the tip of the nose to the insertion of the nasal ala in the cheek x 100 divided by the side-to-side breadth of the nasal alae)." [HPO:probinson]
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 HP:0010650 Hypoplasia of the premaxilla "Underdevelopment of the `Premaxilla` (FMA:76869), which is the embryonic structure that forms the anterior part of the maxilla." [HPO:probinson]
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 HP:0010664 Fusion of the left and right thalami "A developmental defect characterized by fusion of the left and right halves of the `thalamus` (FMA:62007)." [HPO:probinson]
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 HP:0011330 Metopic synostosis "Premature fusion of the metopic suture." [DDD:awilkie]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0025318 Ovarian carcinoma "A malignant neoplasm originating from the surface ovarian epithelium." []
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 HP:0200021 Rounded shoulders 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000128602 SMO / Q99835 / smoothened, frizzled class receptor  / complex / reaction
 ENSG00000164690 SHH / Q15465 / sonic hedgehog  / complex / reaction
 ENSG00000064309 CDON / Q4KMG0 / cell adhesion associated, oncogene regulated  / reaction / complex
 ENSG00000180447 GAS1 / P54826 / growth arrest specific 1  / reaction / complex
 ENSG00000108854 Q9HAU4 / SMURF2 / SMAD specific E3 ubiquitin protein ligase 2  / reaction / complex
 ENSG00000198742 Q9HCE7 / SMURF1 / SMAD specific E3 ubiquitin protein ligase 1  / complex / reaction
 ENSG00000144857 BOC / Q9BWV1 / BOC cell adhesion associated, oncogene regulated  / complex






 

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