ENSG00000128739


Homo sapiens

Features
Gene ID: ENSG00000128739
  
Biological name :SNRPN
  
Synonyms : P63162 / small nuclear ribonucleoprotein polypeptide N / SNRPN
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: 1
Band: q11.2
Gene start: 24823637
Gene end: 24978723
  
Corresponding Affymetrix probe sets: 1560741_at (Human Genome U133 Plus 2.0 Array)   201522_x_at (Human Genome U133 Plus 2.0 Array)   206042_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000495345
Ensembl peptide - ENSP00000463510
Ensembl peptide - ENSP00000494831
Ensembl peptide - ENSP00000306223
Ensembl peptide - ENSP00000375105
Ensembl peptide - ENSP00000382969
Ensembl peptide - ENSP00000382972
Ensembl peptide - ENSP00000452342
Ensembl peptide - ENSP00000462211
Ensembl peptide - ENSP00000463458
NCBI entrez gene - 6638     See in Manteia.
OMIM - 182279
RefSeq - NM_022806
RefSeq - NM_022808
RefSeq - NM_003097
RefSeq - NM_022805
RefSeq - NM_022807
RefSeq Peptide - NP_001336383
RefSeq Peptide - NP_073716
RefSeq Peptide - NP_073717
RefSeq Peptide - NP_073718
RefSeq Peptide - NP_073719
RefSeq Peptide - NP_001336384
RefSeq Peptide - NP_001336385
RefSeq Peptide - NP_001336386
RefSeq Peptide - NP_001336387
RefSeq Peptide - NP_001336388
RefSeq Peptide - NP_001336389
RefSeq Peptide - NP_001336390
RefSeq Peptide - NP_001336391
RefSeq Peptide - NP_001336392
RefSeq Peptide - NP_001336393
RefSeq Peptide - NP_001336394
RefSeq Peptide - NP_003088
swissprot - J3QLE5
swissprot - J3KRY3
swissprot - P63162
swissprot - X5DP00
Ensembl - ENSG00000128739
  
Related genetic diseases (OMIM): 176270 - Prader-Willi syndrome, 176270
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpbENSDARG00000011125Danio rerio
 SNRPLENSGALG00000035421Gallus gallus
 SnrpnENSMUSG00000102252Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SNRPB / P14678 / small nuclear ribonucleoprotein polypeptides B and B1ENSG0000012583593


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR017131  Small ribonucleoprotein associated, SmB/SmN


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0008380 RNA splicing TAS
 biological_processGO:0009725 response to hormone IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex TAS
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0005685 U1 snRNP IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005687 U4 snRNP IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0030532 small nuclear ribonucleoprotein complex TAS
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000044 Hypogonadotrophic hypogonadism "Hypogonadotropic hypogonadism is characterized by reduced function of the gonads (testes in males or ovaries in females) and results from the absence of the gonadal stimulating pituitary hormones: follicle stimulating hormone (FSH) and luteinizing hormone (LH)." [HPO:curators]
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 HP:0000046 Scrotal hypoplasia 
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 HP:0000054 Micropenis 
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 HP:0000060 Hypoplastic clitoris 
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 HP:0000064 Hypoplastic labia minora 
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 HP:0000219 Thin upper lip 
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 HP:0000268 Dolichocephaly 
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 HP:0000341 Narrow forehead "An abnormally reduced side-to-side width of the forehead." [HPO:curators]
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 HP:0000446 Narrow nasal bridge 
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 HP:0000540 Hypermetropia 
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 HP:0000545 Myopia 
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 HP:0000565 Esotropia 
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000670 Carious teeth 
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000717 Autism 
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 HP:0000721 Lack of spontaneous play 
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 HP:0000723 Restrictive behaviour, interests, and activities 
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 HP:0000728 Impaired ability to form peer relationships 
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 HP:0000732 Inflexible adherence to routines or rituals 
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 HP:0000733 Stereotyped, repetitive behaviour 
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 HP:0000750 Impaired language development 
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 HP:0000758 Impaired use of nonverbal behaviors, such as eye-to-eye gaze, facial expression, body posture, and gestures 
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 HP:0000786 Primary amenorrhea 
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 HP:0000789 Infertility 
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 HP:0000823 Delayed puberty 
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 HP:0000824 Growth hormone deficiency "Insufficient production of growth hormone, which is produced by the anterior pituitary gland." [HPO:curators]
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 HP:0000826 Precocious puberty "The onset of secondary sexual characteristics before a normal age. Although it is difficult to define normal age ranges because of the marked variation with which puberty begins in normal children, precocious puberty can be defined as the onset of puberty before the age of 8 years in girls or 9 years in boys." [HPO:curators]
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 HP:0000842 Hyperinsulinemia 
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 HP:0000846 Adrenal insufficiency 
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 HP:0000876 Oligomenorrhea 
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001385 Hip dysplasia 
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 HP:0001425 Heterogeneous 
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 HP:0001426 Multifactorial 
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 HP:0001531 Failure to thrive in infancy 
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0001611 Nasal speech 
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0002033 Poor suck "An inadequate sucking reflex, resulting in the difficult of newborns to be breast-fed." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002236 Frontal hair upsweep "A frontal hair upsweep (also known as cowlick) refers to a lock of hair that stands straight up." [HPO:curators]
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002591 Polyphagia 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002714 Downturned corners of mouth "A morphological `abnormality of the mouth` (HP:0000153) in which the `angle of the mouth` (FMA:77269) is downturned." [HPO:probinson]
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 HP:0002791 Hypoventilation 
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 HP:0002808 Kyphosis 
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 HP:0003144 Increased serum serotonin in 25% 
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 HP:0003199 Decreased muscle mass 
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 HP:0003745 Sporadic 
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 HP:0004279 Hypoplastic hand 
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 HP:0004283 Narrow hand 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005599 Hair hypopigmentation 
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 HP:0005968 Temperature instability "Disordered thermoregulation characterized by an impaired ability to maintain a balance between heat production and heat loss, with resulting instability of body temperature." [HPO:curators]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007010 Poor fine motor coordination 
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 HP:0007015 Poor fine and gross motor coordination 
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0007328 Decreased pain sensation "Reduced ability to perceive painful stimuli." [HPO:curators]
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 HP:0007513 Generalized hypopigmentation 
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 HP:0007730 Reduced iris pigmentation 
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 HP:0007874 Almond-shaped palpebral fissures 
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 HP:0009466 Radial deviation of fingers 
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 HP:0010535 Sleep apnea "An intermittent cessation of airflow at the mouth and nose during sleep. Apneas of at least 10 seconds are considered important, but persons with sleep apnea may have apneas of 20 seconds to up to 2 or 3 minutes. Patients may have up to 15 events per hour of sleep." [HPO:curators]
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 HP:0011463 Childhood onset "Onset of disease at the age of between 1 and 5 years." [DDD:hfirth]
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 HP:0012743 Abdominal obesity "Excessive fat around the stomach and abdomen." [HPO:probinson]
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 HP:0030084 Clinodactyly "An angulation of a digit at an interphalangeal joint in the plane of the palm (finger) or sole (toe)." [pmid:16252026]
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 HP:0200055 Small hands 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
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