ENSG00000125835


Homo sapiens

Features
Gene ID: ENSG00000125835
  
Biological name :SNRPB
  
Synonyms : P14678 / small nuclear ribonucleoprotein polypeptides B and B1 / SNRPB
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: -1
Band: p13
Gene start: 2461634
Gene end: 2470853
  
Corresponding Affymetrix probe sets: 208821_at (Human Genome U133 Plus 2.0 Array)   213175_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000370746
Ensembl peptide - ENSP00000412566
Ensembl peptide - ENSP00000474579
NCBI entrez gene - 6628     See in Manteia.
OMIM - 182282
RefSeq - NM_198216
RefSeq - NM_003091
RefSeq Peptide - NP_003082
RefSeq Peptide - NP_937859
swissprot - P14678
swissprot - Q66K91
swissprot - S4R3P3
Ensembl - ENSG00000125835
  
Related genetic diseases (OMIM): 117650 - Cerebrocostomandibular syndrome, 117650
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpbENSDARG00000011125Danio rerio
 SNRPLENSGALG00000035421Gallus gallus
 SnrpbENSMUSG00000027404Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SNRPN / P63162 / small nuclear ribonucleoprotein polypeptide NENSG0000012873993


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR017131  Small ribonucleoprotein associated, SmB/SmN


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly TAS
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006369 termination of RNA polymerase II transcription TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006479 protein methylation IDA
 biological_processGO:0008334 histone mRNA metabolic process TAS
 biological_processGO:0008380 RNA splicing TAS
 biological_processGO:0051170 import into nucleus TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex TAS
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0005683 U7 snRNP IDA
 cellular_componentGO:0005685 U1 snRNP IDA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005687 U4 snRNP IDA
 cellular_componentGO:0005689 U12-type spliceosomal complex IDA
 cellular_componentGO:0005697 telomerase holoenzyme complex IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0030532 small nuclear ribonucleoprotein complex TAS
 cellular_componentGO:0034709 methylosome IDA
 cellular_componentGO:0034719 SMN-Sm protein complex IDA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IDA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 cellular_componentGO:0071204 histone pre-mRNA 3"end processing complex IEA
 molecular_functionGO:0003723 RNA binding IPI
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030620 U2 snRNA binding IPI
 molecular_functionGO:0070034 telomerase RNA binding IPI
 molecular_functionGO:0071208 histone pre-mRNA DCP binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
SLBP independent Processing of Histone Pre-mRNAs
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
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 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000085 Horseshoe kidney 
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 HP:0000086 Ectopic kidney "A developmental defect in which a kidney is located in an abnormal anatomic position." [HPO:curators]
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 HP:0000107 Renal cysts 
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 HP:0000162 Glossoptosis 
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 HP:0000164 Abnormality of the teeth "Any abnormality of the primary (deciduous) or permanent teeth." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000185 Cleft soft palate "Cleft of the soft palate (also known as the velum, or muscular palate) as a result of a developmental defect occurring between the 7th and 12th week of pregnancy. Cleft soft palate can cause functional abnormalities of the Eustachian tube with resulting middle ear anomalies and hearing difficulties, as well as speech problems associated with hypernasal speech due to velopharyngeal insufficiency." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000413 External auditory canal atresia "Absence or failure to form of the external auditory canal." [HPO:curators]
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 HP:0000465 Webbed neck 
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 HP:0000878 11 pairs of ribs 
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 HP:0001249 Mental retardation 
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 HP:0001374 Congenital hip dislocation 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001522 Death in infancy 
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 HP:0001545 Anteriorly placed anus "Anterior malposition of the anus." [HPO:curators]
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 HP:0001561 Polyhydramnios 
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 HP:0001591 Bell-shaped chest 
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 HP:0001611 Nasal speech 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002025 Anal stenosis "Abnormal narrowing of the anal opening." [HPO:curators]
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 HP:0002132 Porencephaly 
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 HP:0002324 Hydranencephaly 
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 HP:0002475 Meningomyelocele 
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 HP:0002514 Cerebral calcification "The presence of calcification within brain structures." [HPO:curators]
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 HP:0002643 Neonatal respiratory distress 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002779 Tracheomalacia 
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 HP:0002808 Kyphosis 
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 HP:0002987 Elbow contractures 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004468 Anomalous tracheal cartilage 
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 HP:0004695 calcaneal epiphyseal stippling 
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 HP:0005257 Thoracic hypoplasia 
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 HP:0005792 Humeral hypoplasia 
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 HP:0006593 Anomalous rib insertion to vertebrae 
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 HP:0008897 Growth retardation, progressive 
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 HP:0010290 Short hard palate "Distance between the labial point of the incisive papilla to the midline junction of the hard and soft palate more than 2 SD below the mean (objective) or apparently decreased length of the hard palate (subjective)." [pmid:19125428]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0030282 Posterior rib gap "Radiolucent focal defect of the posterior portion of a rib shaft. The gaps may lead to flail chest." [UToronto:bgallinger]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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