ENSGALG00000035421


Gallus gallus

Features
Gene ID: ENSGALG00000035421
  
Biological name :SNRPL
  
Synonyms : Q9PV94 / Small nuclear ribonucleoprotein-associated protein B / SNRPL
  
Possible biological names infered from orthology : P14678 / P27048 / P63162 / P63163 / small nuclear ribonucleoprotein N / small nuclear ribonucleoprotein polypeptide N / small nuclear ribonucleoprotein polypeptides B and B1 / SNRPB / SNRPN
  
Species: Gallus gallus
  
Chr. number: 20
Strand: 1
Band:
Gene start: 10952507
Gene end: 10955311
  
Corresponding Affymetrix probe sets: Gga.3086.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000059418
Ensembl peptide - ENSGALP00000046899
NCBI entrez gene - 395298     See in Manteia.
RefSeq - NM_204599
RefSeq Peptide - NP_989930
swissprot - Q9PV94
swissprot - A0A1L1RKX9
Ensembl - ENSGALG00000035421
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpbENSDARG00000011125Danio rerio
 SNRPBENSG00000125835Homo sapiens
 SNRPNENSG00000128739Homo sapiens
 SnrpbENSMUSG00000027404Mus musculus
 SnrpnENSMUSG00000102252Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR017131  Small ribonucleoprotein associated, SmB/SmN


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly ISS
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0005685 U1 snRNP IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005687 U4 snRNP ISS
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005829 cytosol ISS
 cellular_componentGO:0034709 methylosome ISS
 cellular_componentGO:0034719 SMN-Sm protein complex ISS
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
SLBP independent Processing of Histone Pre-mRNAs
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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