ENSMUSG00000027404


Mus musculus

Features
Gene ID: ENSMUSG00000027404
  
Biological name :Snrpb
  
Synonyms : P27048 / Small nuclear ribonucleoprotein-associated protein B / Snrpb
  
Possible biological names infered from orthology : P14678 / small nuclear ribonucleoprotein polypeptides B and B1
  
Species: Mus musculus
  
Chr. number: 2
Strand: -1
Band: F1
Gene start: 130171414
Gene end: 130179403
  
Corresponding Affymetrix probe sets: 10487622 (MoGene1.0st)   1419260_a_at (Mouse Genome 430 2.0 Array)   1437193_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000143633
Ensembl peptide - ENSMUSP00000099488
NCBI entrez gene - 20638     See in Manteia.
MGI - MGI:98342
RefSeq - NM_009225
RefSeq - XM_006499059
RefSeq Peptide - NP_033251
swissprot - A0A0G2JGN4
swissprot - P27048
Ensembl - ENSMUSG00000027404
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpbENSDARG00000011125Danio rerio
 SNRPLENSGALG00000035421Gallus gallus
 SNRPBENSG00000125835Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Snrpn / P63163 / small nuclear ribonucleoprotein N / P63162* / small nuclear ribonucleoprotein polypeptide N*ENSMUSG0000010225292


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR017131  Small ribonucleoprotein associated, SmB/SmN


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000387 spliceosomal snRNP assembly IEA
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006479 protein methylation IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0005683 U7 snRNP IEA
 cellular_componentGO:0005685 U1 snRNP IEA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005687 U4 snRNP IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 cellular_componentGO:0005697 telomerase holoenzyme complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol ISS
 cellular_componentGO:0034709 methylosome IEA
 cellular_componentGO:0034719 SMN-Sm protein complex IEA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 cellular_componentGO:0071204 histone pre-mRNA 3"end processing complex IDA
 molecular_functionGO:0003723 RNA binding ISO
 molecular_functionGO:0030620 U2 snRNA binding IEA
 molecular_functionGO:0070034 telomerase RNA binding IEA
 molecular_functionGO:0071208 histone pre-mRNA DCP binding IDA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
SLBP independent Processing of Histone Pre-mRNAs
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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