ENSDARG00000011125


Danio rerio

Features
Gene ID: ENSDARG00000011125
  
Biological name :snrpb
  
Synonyms : small nuclear ribonucleoprotein polypeptides B and B1 / snrpb
  
Possible biological names infered from orthology : P14678 / P27048 / P63162 / P63163 / Small nuclear ribonucleoprotein-associated protein B / small nuclear ribonucleoprotein N / small nuclear ribonucleoprotein polypeptide N / SNRPN
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 57478337
Gene end: 57485411
  
Corresponding Affymetrix probe sets: Dr.7936.1.A1_at (Zebrafish Array)   NM_205667_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000023337
NCBI entrez gene - 402966     See in Manteia.
RefSeq - NM_205667
RefSeq Peptide - NP_991230
swissprot - Q9I9E5
ZFIN ID - ZDB-GENE-040426-1819
Ensembl - ENSDARG00000011125
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNRPLENSGALG00000035421Gallus gallus
 SNRPBENSG00000125835Homo sapiens
 SNRPNENSG00000128739Homo sapiens
 SnrpbENSMUSG00000027404Mus musculus
 SnrpnENSMUSG00000102252Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR017131  Small ribonucleoprotein associated, SmB/SmN


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0005685 U1 snRNP IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005687 U4 snRNP IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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