ENSG00000128973


Homo sapiens

Features
Gene ID: ENSG00000128973
  
Biological name :CLN6
  
Synonyms : CLN6 / CLN6, transmembrane ER protein / Q9NWW5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: -1
Band: q23
Gene start: 68206992
Gene end: 68257211
  
Corresponding Affymetrix probe sets: 1567076_at (Human Genome U133 Plus 2.0 Array)   1567078_x_at (Human Genome U133 Plus 2.0 Array)   1567079_at (Human Genome U133 Plus 2.0 Array)   1567080_s_at (Human Genome U133 Plus 2.0 Array)   1567081_x_at (Human Genome U133 Plus 2.0 Array)   218161_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000457783
Ensembl peptide - ENSP00000490627
Ensembl peptide - ENSP00000490373
Ensembl peptide - ENSP00000490295
Ensembl peptide - ENSP00000490204
Ensembl peptide - ENSP00000490057
Ensembl peptide - ENSP00000490011
Ensembl peptide - ENSP00000490010
Ensembl peptide - ENSP00000489950
Ensembl peptide - ENSP00000489851
Ensembl peptide - ENSP00000489843
Ensembl peptide - ENSP00000489649
Ensembl peptide - ENSP00000457822
Ensembl peptide - ENSP00000249806
Ensembl peptide - ENSP00000445770
Ensembl peptide - ENSP00000454818
Ensembl peptide - ENSP00000457384
NCBI entrez gene - 54982     See in Manteia.
OMIM - 606725
RefSeq - NM_017882
RefSeq Peptide - NP_060352
swissprot - A0A1B0GUD2
swissprot - A0A1B0GU90
swissprot - A0A1B0GU39
swissprot - A0A1B0GTV3
swissprot - A0A1B0GTU6
swissprot - A0A1B0GTD3
swissprot - A0A0S2Z5D0
swissprot - A0A024R601
swissprot - H3BNF1
swissprot - H3BTY4
swissprot - H3BUT1
swissprot - H3BUV4
swissprot - A0A1B0GVR8
swissprot - Q9NWW5
swissprot - A0A1B0GUY3
swissprot - A0A1B0GUQ7
Ensembl - ENSG00000128973
  
Related genetic diseases (OMIM): 204300 - Ceroid lipofuscinosis, neuronal, Kufs type, adult onset, 204300
  601780 - Ceroid lipofuscinosis, neuronal, 6, 601780
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cln6aENSDARG00000077584Danio rerio
 cln6bENSDARG00000090002Danio rerio
 CLN6ENSGALG00000007981Gallus gallus
 Cln6ENSMUSG00000032245Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR029255  Ceroid-lipofuscinosis neuronal protein 6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001573 ganglioside metabolic process IMP
 biological_processGO:0007040 lysosome organization IEA
 biological_processGO:0007042 lysosomal lumen acidification IMP
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0008203 cholesterol metabolic process IMP
 biological_processGO:0030163 protein catabolic process NAS
 biological_processGO:0030203 glycosaminoglycan metabolic process IMP
 biological_processGO:0031987 locomotion involved in locomotory behavior IEA
 biological_processGO:0044265 cellular macromolecule catabolic process IEA
 biological_processGO:0045862 positive regulation of proteolysis IMP
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen IDA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000529 Progressive visual loss 
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 HP:0000546 Retinal degeneration 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000726 Dementia 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001311 Neurophysiological abnormality 
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0002059 Cerebral atrophy 
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 HP:0002071 Extrapyramidal signs 
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 HP:0002074 Autofluorescent lipopigment in neurons 
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 HP:0002333 Motor deterioration 
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 HP:0002352 Leukoencephalopathy 
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 HP:0002367 Visual hallucinations 
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 HP:0003205 Curvilinear profiles ultrastructurally 
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 HP:0003208 Fingerprint profiles ultrastructurally 
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 HP:0003226 Rectilinear profiles ultrastructurally 
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 HP:0003581 Onset in adulthood 
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 HP:0003657 Granular osmiophilic deposits (GROD) in cells 
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 HP:0008765 Auditory hallucinations 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr