ENSGALG00000007981


Gallus gallus

Features
Gene ID: ENSGALG00000007981
  
Biological name :CLN6
  
Synonyms : ceroid-lipofuscinosis neuronal protein 6 / CLN6
  
Possible biological names infered from orthology : ceroid-lipofuscinosis, neuronal 6 / CLN6, transmembrane ER protein / Q9NWW5
  
Species: Gallus gallus
  
Chr. number: 10
Strand: -1
Band:
Gene start: 19164334
Gene end: 19170698
  
Corresponding Affymetrix probe sets: Gga.11238.1.S1_at (Chicken Array)   Gga.7556.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000012944
NCBI entrez gene - 415558     See in Manteia.
RefSeq - NM_001277628
RefSeq Peptide - NP_001264557
swissprot - E1C3M7
Ensembl - ENSGALG00000007981
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cln6aENSDARG00000077584Danio rerio
 cln6bENSDARG00000090002Danio rerio
 CLN6ENSG00000128973Homo sapiens
 Cln6ENSMUSG00000032245Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR029255  Ceroid-lipofuscinosis neuronal protein 6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001573 ganglioside metabolic process IEA
 biological_processGO:0007040 lysosome organization IEA
 biological_processGO:0007042 lysosomal lumen acidification IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0008203 cholesterol metabolic process IEA
 biological_processGO:0030203 glycosaminoglycan metabolic process IEA
 biological_processGO:0031987 locomotion involved in locomotory behavior IEA
 biological_processGO:0044265 cellular macromolecule catabolic process IEA
 biological_processGO:0045862 positive regulation of proteolysis IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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