ENSG00000129535


Homo sapiens

Features
Gene ID: ENSG00000129535
  
Biological name :NRL
  
Synonyms : neural retina leucine zipper / NRL / P54845
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: -1
Band: q12
Gene start: 24080107
Gene end: 24115014
  
Corresponding Affymetrix probe sets: 206596_s_at (Human Genome U133 Plus 2.0 Array)   206597_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000454180
Ensembl peptide - ENSP00000452966
Ensembl peptide - ENSP00000454062
Ensembl peptide - ENSP00000380191
Ensembl peptide - ENSP00000380193
Ensembl peptide - ENSP00000380197
NCBI entrez gene - 4901     See in Manteia.
OMIM - 162080
RefSeq - XM_017021350
RefSeq - NM_006177
RefSeq - XM_005267710
RefSeq - XM_011536801
RefSeq - XM_011536802
RefSeq - XM_011536804
RefSeq - XM_011536805
RefSeq - XM_005267708
RefSeq - XM_005267709
RefSeq Peptide - NP_001341697
RefSeq Peptide - NP_001341698
RefSeq Peptide - NP_006168
swissprot - P54845
swissprot - H0YNW2
Ensembl - ENSG00000129535
  
Related genetic diseases (OMIM): 162080 - Retinal degeneration, autosomal recessive, clumped pigment type
  613750 - Retinitis pigmentosa 27, 613750

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nrlENSDARG00000100466Danio rerio
 NrlENSMUSG00000040632Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MAFB / Q9Y5Q3 / MAF bZIP transcription factor BENSG0000020410355
MAFA / Q8NHW3 / MAF bZIP transcription factor AENSG0000018275954
MAF / O75444 / MAF bZIP transcription factorENSG0000017857354
MAFK / O60675 / MAF bZIP transcription factor KENSG0000019851724
MAFF / Q9ULX9 / MAF bZIP transcription factor FENSG0000018502224
MAFG / O15525 / MAF bZIP transcription factor GENSG0000019706323


Protein motifs (from Interpro)
Interpro ID Name
 IPR004826  Basic leucine zipper domain, Maf-type
 IPR004827  Basic-leucine zipper domain
 IPR008917  Transcription factor, Skn-1-like, DNA-binding domain superfamily
 IPR013592  Maf transcription factor, N-terminal
 IPR024874  Transcription factor Maf family
 IPR028575  Neural retina-specific leucine zipper protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II TAS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007468 regulation of rhodopsin gene expression IEA
 biological_processGO:0007601 visual perception TAS
 biological_processGO:0045872 positive regulation of rhodopsin gene expression IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0046548 retinal rod cell development IEA
 biological_processGO:0050896 response to stimulus IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding TAS
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003713 transcription coactivator activity IMP
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043522 leucine zipper domain binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IDA
 molecular_functionGO:1990841 promoter-specific chromatin binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000550 Abolished electroretinogram (ERG) 
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000602 Ophthalmoplegia 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000662 Night blindness 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000987 Scarring 
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 HP:0001249 Mental retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007675 Progressive night blindness 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007950 Peripapillary chorioretinal atrophy 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008736 Hypoplasia of penis 
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 HP:0040049 Macular edema 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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