ENSG00000130826


Homo sapiens

Features
Gene ID: ENSG00000130826
  
Biological name :DKC1
  
Synonyms : DKC1 / dyskerin pseudouridine synthase 1 / O60832
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: q28
Gene start: 154762742
Gene end: 154777689
  
Corresponding Affymetrix probe sets: 201478_s_at (Human Genome U133 Plus 2.0 Array)   201479_at (Human Genome U133 Plus 2.0 Array)   216212_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000407325
Ensembl peptide - ENSP00000407253
Ensembl peptide - ENSP00000478387
Ensembl peptide - ENSP00000395693
Ensembl peptide - ENSP00000389304
Ensembl peptide - ENSP00000358563
Ensembl peptide - ENSP00000400542
NCBI entrez gene - 1736     See in Manteia.
OMIM - 300126
RefSeq - NM_001142463
RefSeq - NM_001363
RefSeq - NM_001288747
RefSeq Peptide - NP_001275676
RefSeq Peptide - NP_001135935
RefSeq Peptide - NP_001354
swissprot - O60832
swissprot - C9IYT0
swissprot - H7BZF2
swissprot - H7C0M1
swissprot - H7C2Q2
swissprot - H7C2Q9
Ensembl - ENSG00000130826
  
Related genetic diseases (OMIM): 305000 - Dyskeratosis congenita, X-linked, 305000
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 dkc1ENSDARG00000016484Danio rerio
 DKC1ENSGALG00000005054Gallus gallus
 Dkc1ENSMUSG00000031403Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002478  PUA domain
 IPR002501  Pseudouridine synthase II, N-terminal
 IPR004521  Uncharacterised domain CHP00451
 IPR004802  tRNA pseudouridine synthase B family
 IPR012960  Dyskerin-like
 IPR015947  PUA-like superfamily
 IPR020103  Pseudouridine synthase, catalytic domain superfamily
 IPR032819  tRNA pseudouridylate synthase B, C-terminal
 IPR036974  PUA domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000495 box H/ACA snoRNA 3"-end processing IBA
 biological_processGO:0001522 pseudouridine synthesis IEA
 biological_processGO:0006364 rRNA processing TAS
 biological_processGO:0006396 RNA processing TAS
 biological_processGO:0007004 telomere maintenance via telomerase TAS
 biological_processGO:0008283 cell proliferation TAS
 biological_processGO:0009451 RNA modification IEA
 biological_processGO:0031118 rRNA pseudouridine synthesis TAS
 biological_processGO:0031120 snRNA pseudouridine synthesis IBA
 biological_processGO:0032212 positive regulation of telomere maintenance via telomerase IEA
 biological_processGO:0033979 box H/ACA snoRNA metabolic process IEA
 biological_processGO:0042254 ribosome biogenesis IEA
 biological_processGO:0051973 positive regulation of telomerase activity IMP
 biological_processGO:0090669 telomerase RNA stabilization IMP
 biological_processGO:1904851 positive regulation of establishment of protein localization to telomere IMP
 biological_processGO:1904872 regulation of telomerase RNA localization to Cajal body IMP
 biological_processGO:1904874 positive regulation of telomerase RNA localization to Cajal body IMP
 biological_processGO:1990481 mRNA pseudouridine synthesis IBA
 cellular_componentGO:0001650 fibrillar center IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005697 telomerase holoenzyme complex TAS
 cellular_componentGO:0005730 nucleolus TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031429 box H/ACA snoRNP complex TAS
 cellular_componentGO:0072589 box H/ACA scaRNP complex TAS
 cellular_componentGO:0090661 box H/ACA telomerase RNP complex TAS
 molecular_functionGO:0003720 telomerase activity IDA
 molecular_functionGO:0003723 RNA binding IPI
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0009982 pseudouridine synthase activity IBA
 molecular_functionGO:0016853 isomerase activity IEA
 molecular_functionGO:0034513 box H/ACA snoRNA binding IPI
 molecular_functionGO:0070034 telomerase RNA binding IPI


Pathways (from Reactome)
Pathway description
Telomere Extension By Telomerase
rRNA modification in the nucleus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000008 Abnormality of female internal genitalia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000085 Horseshoe kidney 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000365 Hearing loss 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000498 Blepharitis "Inflammation of the eyelids." [HPO:curators]
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 HP:0000499 Abnormality of the eyelashes "An abnormality of the `eyelashes` (FMA:53669)." [HPO:probinson]
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 HP:0000509 Conjunctivitis "Inflammation of the conjunctiva." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000534 Abnormality of the eyebrow "An abnormality of the `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000600 Abnormality of the pharynx 
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 HP:0000648 Optic atrophy 
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 HP:0000653 Sparse eyelashes "Decreased density/number of eyelashes." [pmid:19125427]
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000670 Carious teeth 
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 HP:0000679 Taurodontia 
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 HP:0000704 Periodontal disease 
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 HP:0000819 Diabetes mellitus 
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000953 Hyperpigmentation 
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0000982 Palmoplantar keratoderma 
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 HP:0001034 Hyperpigmented macules 
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 HP:0001053 Hypopigmented skin patches 
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001276 Hypertonia 
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001394 Cirrhosis 
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 HP:0001399 Hepatic failure 
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 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001741 Phimosis 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001807 Nail ridging 
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 HP:0001809 Longitudinal splitting 
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 HP:0001873 Thrombocytopenia 
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 HP:0001874 Abnormality of neutrophil 
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 HP:0001876 Pancytopenia 
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 HP:0001881 Abnormality of leukocytes 
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 HP:0001882 Leukopenia 
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 HP:0001903 Anemia 
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 HP:0001928 Abnormality of coagulation 
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 HP:0002024 Malabsorption 
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 HP:0002043 Esophageal stricture 
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 HP:0002091 Restrictive lung disease 
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 HP:0002119 Ventriculomegaly 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002165 Pterygium formation (nails) 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002206 Pulmonary fibrosis 
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 HP:0002209 Sparse scalp hair "Sparseness of the `head hair` (FMA:54241)." [HPO:probinson]
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 HP:0002216 Premature graying of hair 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002514 Cerebral calcification "The presence of calcification within brain structures." [HPO:curators]
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 HP:0002575 Tracheoesophageal fistula "An abnormal connection (fistula) between the esophagus and the trachea." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002664 Neoplasia "An organ or organ-system abnormality that consists of uncontrolled autonomous cell-proliferation which can occur in any part of the body as a benign or malignant tumour or neoplasm." [HPO:curators]
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 HP:0002665 Lymphoma "A cancer originating in lymphocytes and presenting as a solid tumor of lymhpoid cells." [HPO:curators]
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 HP:0002721 Immunodeficiency 
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 HP:0002745 Oral leukoplakia 
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0002860 Squamous cell carcinoma 
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 HP:0002863 Myelodysplasia 
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 HP:0002894 Pancreatic cancer 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004334 Dermal atrophy "Partial or complete wasting (atrophy) of the skin." [HPO:curators]
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 HP:0004808 Acute myeloid leukemia "A form of leukemia characterized by overproduction of an early myeloid cell." [HPO:curators]
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 HP:0005212 Anal mucosal leukoplakia 
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 HP:0005374 Cellular immunodeficiency 
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 HP:0005528 Bone marrow hypoplasia 
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 HP:0006480 Premature loss of teeth 
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 HP:0007392 Excessive wrinkled skin 
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 HP:0007427 Reticulated skin pigmentation 
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 HP:0007440 Generalized hyperpigmentation 
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 HP:0008065 Aplasia/Hypoplasia of the skin 
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 HP:0008066 Abnormal blistering of the skin 
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 HP:0008070 Sparse hair 
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 HP:0008404 Nail dystrophy, variable 
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 HP:0008661 Urethral stenosis 
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 HP:0008734 Decreased testicular size 
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 HP:0009926 Increased tear production "Abnormally in creased lacrimation." [HPO:curators]
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 HP:0010450 Esophageal stenosis "An abnormal narrowing of the lumen of the esophagus." [HPO:curators]
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 HP:0010624 Aplastic/hypoplastic toenails 
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 HP:0010885 Aseptic necrosis "A disease where there is cellular death (necrosis) of bone components due to interruption of the blood supply." [HPO:sdoelken]
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 HP:0011358 Generalized hypopigmentation of hair "Reduced pigmentation of hair diffusely." [DDD:cmoss]
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 HP:0011364 White hair "Hypopigmented hair that appears white." [DDD:cmoss]
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 HP:0012189 Hodgkin s lymphoma "A typer of lymphoma characterized microscopically by multinucleated Reed-Sternberg cells." [HPO:probinson]
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 HP:0012732 Anorectal anomaly "An abnormality of the anus or rectum." [HPO:probinson]
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 HP:0100585 Teleangiectasia of the skin 
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 HP:0100627 Displacement of the external urethral meatus "A displacement of the external urethral orifice from its normal position (in males normally placed at the tip of glans penis, in females normally placed about 2.5 cm behind the glans clitoridis and immediately in front of that of the vagina)." [HPO:sdoelken]
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 HP:0100670 Rough bone trabeculation 
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 HP:0200037 skin vesicle "A circumscribed, fluid-containing, epidermal elevation generally considered less than 10mm in diameter at the widest point." [HPO:SKOEHLER]
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000164362 TERT / O14746 / telomerase reverse transcriptase  / reaction / complex
 ENSG00000130826 DKC1 / O60832 / dyskerin pseudouridine synthase 1  / complex / reaction






 

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