ENSG00000131018


Homo sapiens

Features
Gene ID: ENSG00000131018
  
Biological name :SYNE1
  
Synonyms : Q8NF91 / spectrin repeat containing nuclear envelope protein 1 / SYNE1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: -1
Band: q25.2
Gene start: 152121684
Gene end: 152637801
  
Corresponding Affymetrix probe sets: 209447_at (Human Genome U133 Plus 2.0 Array)   215350_at (Human Genome U133 Plus 2.0 Array)   232027_at (Human Genome U133 Plus 2.0 Array)   244070_at (Human Genome U133 Plus 2.0 Array)   244144_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000441052
Ensembl peptide - ENSP00000440193
Ensembl peptide - ENSP00000441264
Ensembl peptide - ENSP00000481873
Ensembl peptide - ENSP00000446021
Ensembl peptide - ENSP00000443879
Ensembl peptide - ENSP00000442805
Ensembl peptide - ENSP00000341887
Ensembl peptide - ENSP00000346701
Ensembl peptide - ENSP00000356217
Ensembl peptide - ENSP00000356220
Ensembl peptide - ENSP00000356222
Ensembl peptide - ENSP00000356224
Ensembl peptide - ENSP00000356226
Ensembl peptide - ENSP00000390858
Ensembl peptide - ENSP00000390975
Ensembl peptide - ENSP00000396024
Ensembl peptide - ENSP00000414510
Ensembl peptide - ENSP00000437411
Ensembl peptide - ENSP00000438508
NCBI entrez gene - 23345     See in Manteia.
OMIM - 608441
RefSeq - XM_017010619
RefSeq - XM_006715422
RefSeq - XM_006715423
RefSeq - XM_006715424
RefSeq - XM_006715425
RefSeq - XM_011535641
RefSeq - XM_011535642
RefSeq - XM_011535643
RefSeq - XM_011535644
RefSeq - XM_011535645
RefSeq - XM_017010608
RefSeq - XM_017010609
RefSeq - XM_017010610
RefSeq - XM_017010611
RefSeq - XM_017010612
RefSeq - XM_017010613
RefSeq - XM_017010614
RefSeq - XM_017010615
RefSeq - XM_017010616
RefSeq - XM_017010617
RefSeq - XM_017010618
RefSeq - NM_033071
RefSeq - NM_182961
RefSeq - XM_006715407
RefSeq - XM_006715408
RefSeq - XM_006715409
RefSeq - XM_006715410
RefSeq - XM_006715411
RefSeq - XM_006715412
RefSeq - XM_006715413
RefSeq - XM_006715414
RefSeq - XM_006715415
RefSeq - XM_006715416
RefSeq - XM_006715417
RefSeq - XM_006715420
RefSeq - XM_006715421
RefSeq Peptide - NP_892006
RefSeq Peptide - NP_149062
swissprot - A0A0C4DH48
swissprot - A0A0C4DG40
swissprot - F5GXQ8
swissprot - F5GYQ7
swissprot - F5GZ83
swissprot - F5H422
swissprot - F5H4Q0
swissprot - F5H6R8
swissprot - F8WAI0
swissprot - H0Y325
swissprot - H0Y326
swissprot - H0YFT4
swissprot - H0YGD3
swissprot - Q8NF91
swissprot - A0A087WYJ5
swissprot - E9PEL9
swissprot - Q5JV20
swissprot - E7ENN3
Ensembl - ENSG00000131018
  
Related genetic diseases (OMIM): 610743 - Spinocerebellar ataxia, autosomal recessive 8, 610743
  612998 - Emery-Dreifuss muscular dystrophy 4, autosomal dominant, 612998
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 syne1aENSDARG00000009499Danio rerio
 syne1bENSDARG00000063068Danio rerio
 ENSGALG00000013505Gallus gallus
 ENSGALG00000042638Gallus gallus
 Syne1ENSMUSG00000096054Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SYNE2 / Q8WXH0 / spectrin repeat containing nuclear envelope protein 2ENSG0000005465424
FLNC / Q14315 / filamin CENSG000001285916
FLNA / P21333 / filamin AENSG000001969245
FLNB / O75369 / filamin BENSG000001360685
CLMN / calmin / Q96JQ2ENSG000001659594


Protein motifs (from Interpro)
Interpro ID Name
 IPR001589  Actinin-type actin-binding domain, conserved site
 IPR001715  Calponin homology domain
 IPR002017  Spectrin repeat
 IPR012315  KASH domain
 IPR018159  Spectrin/alpha-actinin
 IPR030265  Nesprin-1
 IPR036872  CH domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006997 nucleus organization NAS
 biological_processGO:0007030 Golgi organization IDA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0042692 muscle cell differentiation IDA
 biological_processGO:0090286 cytoskeletal anchoring at nuclear membrane IEA
 biological_processGO:0090292 nuclear matrix anchoring at nuclear membrane IDA
 cellular_componentGO:0000932 P-body IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0005640 nuclear outer membrane IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030017 sarcomere IDA
 cellular_componentGO:0031965 nuclear membrane IDA
 cellular_componentGO:0034993 meiotic nuclear membrane microtubule tethering complex IEA
 cellular_componentGO:0045211 postsynaptic membrane IDA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0005521 lamin binding IPI
 molecular_functionGO:0019899 enzyme binding IPI
 molecular_functionGO:0042803 protein homodimerization activity ISS
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
Meiotic synapsis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000467 Neck muscle weakness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001310 Dysmetria 
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002070 Limb ataxia 
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003560 Muscular dystrophy "The term dystrophy means abnormal growth. However, muscular dystrophy is used to describe primary myopathies with a genetic basis and a progressive course characterized by progressive skeletal muscle weakness, defects in muscle proteins, and the apoptosis of muscle cells." [HPO:curators]
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 HP:0003581 Onset in adulthood 
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 HP:0003677 Slow progression 
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 HP:0003701 Proximal muscle weakness "A lack of strength of the proximal muscles." [HPO:curators]
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 HP:0003812 Phenotypic variability 
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 HP:0005144 Left ventricular septal hypertrophy 
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 HP:0007126 Proximal amyotrophy "Amyotrophy (muscular atrophy) affecting the proximal musculature." [HPO:curators]
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 HP:0011463 Childhood onset "Onset of disease at the age of between 1 and 5 years." [DDD:hfirth]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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