ENSGALG00000013505


Gallus gallus

Features
Gene ID: ENSGALG00000013505
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : Mus musculus spectrin repeat containing, nuclear envelope 1 (Syne1), transcript variant 5, mRNA. / Q6ZWR6 / Q8NF91 / spectrin repeat containing nuclear envelope protein 1 / SYNE1
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 49318532
Gene end: 49488810
  
Corresponding Affymetrix probe sets: Gga.15842.1.S1_at (Chicken Array)   Gga.15842.1.S1_s_at (Chicken Array)   Gga.18878.1.S1_s_at (Chicken Array)   Gga.9526.1.S1_s_at (Chicken Array)   GgaAffx.24072.1.S1_at (Chicken Array)   GgaAffx.8215.1.S1_at (Chicken Array)   GgaAffx.8215.2.S1_s_at (Chicken Array)   GgaAffx.8600.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000021957
Ensembl peptide - ENSGALP00000058888
Ensembl peptide - ENSGALP00000052247
Ensembl peptide - ENSGALP00000051278
Ensembl peptide - ENSGALP00000051228
Ensembl peptide - ENSGALP00000049550
NCBI entrez gene - 421640     See in Manteia.
RefSeq - XM_004935632
RefSeq - XM_015284261
swissprot - A0A1D5PES0
swissprot - A0A1D5PEM3
swissprot - A0A1L1RJG6
swissprot - F1NG02
swissprot - A0A1D5P9Z2
swissprot - A0A1D5PHG8
Ensembl - ENSGALG00000013505
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 syne1aENSDARG00000009499Danio rerio
 syne1bENSDARG00000063068Danio rerio
 SYNE1ENSG00000131018Homo sapiens
 Syne1ENSMUSG00000096054Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SYNE2 / spectrin repeat containing nuclear envelope protein 2 / Q6ZWQ0* / Q8WXH0* / spectrin repeat containing, nuclear envelope 2*ENSGALG0000001181125
FLNB / filamin-B / O75369* / Q80X90*ENSGALG000000056784
CLMN / calmin / Q8C5W0* / Q96JQ2*ENSGALG000000307191
SYNE1* / Q6ZWR6* / Q8NF91* / spectrin repeat containing nuclear envelope protein 1* / Mus musculus spectrin repeat containing, nuclear envelope 1 (Syne1), transcript variant 5, mRNA.*ENSGALG000000426380


Protein motifs (from Interpro)
Interpro ID Name
 IPR002017  Spectrin repeat
 IPR012315  KASH domain
 IPR013170  mRNA splicing factor Cwf21 domain
 IPR018159  Spectrin/alpha-actinin
 IPR030265  Nesprin-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0090286 cytoskeletal anchoring at nuclear membrane IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0034993 meiotic nuclear membrane microtubule tethering complex IEA
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr