ENSDARG00000009499


Danio rerio

Features
Gene ID: ENSDARG00000009499
  
Biological name :syne1a
  
Synonyms : spectrin repeat containing, nuclear envelope 1a / syne1a
  
Possible biological names infered from orthology : Mus musculus spectrin repeat containing, nuclear envelope 1 (Syne1), transcript variant 5, mRNA. / Q6ZWR6 / Q8NF91 / spectrin repeat containing nuclear envelope protein 1 / SYNE1
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 26095530
Gene end: 26359434
  
Corresponding Affymetrix probe sets: Dr.3318.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000118057
Ensembl peptide - ENSDARP00000127449
swissprot - F1QC38
swissprot - U3JB27
ZFIN ID - ZDB-GENE-030131-4172
Ensembl - ENSDARG00000009499
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000013505Gallus gallus
 ENSGALG00000042638Gallus gallus
 SYNE1ENSG00000131018Homo sapiens
 Syne1ENSMUSG00000096054Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
syne1b / spectrin repeat containing, nuclear envelope 1b / SYNE1* / Q6ZWR6* / Q8NF91* / spectrin repeat containing nuclear envelope protein 1* / Mus musculus spectrin repeat containing, nuc...ENSDARG0000006306854
si:ch211-207i1.2 / SYNE2* / Q8WXH0* / Q6ZWQ0* / spectrin repeat containing, nuclear envelope 2* / spectrin repeat containing nuclear envelope protein 2*ENSDARG0000003010718
syne2b / spectrin repeat containing, nuclear envelope 2b / SYNE2* / Q8WXH0* / Q6ZWQ0* / spectrin repeat containing, nuclear envelope 2* / spectrin repeat containing nuclear envelope protein 2*ENSDARG000000534846
flnca / filamin C, gamma a (actin binding protein 280) / FLNC* / Q14315* / Q8VHX6* / filamin C*ENSDARG000000185665
flncb / filamin C, gamma b (actin binding protein 280) / FLNC* / Q14315* / filamin C*ENSDARG000000188205
flna / filamin A, alpha (actin binding protein 280) / P21333* / Q8BTM8* / filamin A*ENSDARG000000742015
flnb / filamin B, beta (actin binding protein 278)ENSDARG000000922813
CABZ01030862.1ENSDARG000000983743
clmn / calmin / Q8C5W0* / Q96JQ2*ENSDARG000000968672
si:ch211-137a8.2ENSDARG000000689262
zgc:100997 / CLMN* / calmin* / Q8C5W0* / Q96JQ2*ENSDARG000000436672
zgc:165653ENSDARG000001047131
FP325130.1 / FLNB* / O75369* / filamin B*ENSDARG000001125270


Protein motifs (from Interpro)
Interpro ID Name
 IPR001589  Actinin-type actin-binding domain, conserved site
 IPR001715  Calponin homology domain
 IPR002017  Spectrin repeat
 IPR012315  KASH domain
 IPR018159  Spectrin/alpha-actinin
 IPR030265  Nesprin-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0090286 cytoskeletal anchoring at nuclear membrane IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0034993 meiotic nuclear membrane microtubule tethering complex IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr