ENSDARG00000030107


Danio rerio

Features
Gene ID: ENSDARG00000030107
  
Biological name :si:ch211-207i1.2
  
Synonyms : si:ch211-207i1.2
  
Possible biological names infered from orthology : Q6ZWQ0 / Q8WXH0 / spectrin repeat containing, nuclear envelope 2 / spectrin repeat containing nuclear envelope protein 2 / SYNE2
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 21638397
Gene end: 21806170
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000112581
Ensembl peptide - ENSDARP00000119338
Ensembl peptide - ENSDARP00000126653
Ensembl peptide - ENSDARP00000126725
swissprot - F1R583
swissprot - F1RD27
swissprot - R4GDU6
swissprot - R4GE14
ZFIN ID - ZDB-GENE-041014-149
Ensembl - ENSDARG00000030107
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SYNE2ENSGALG00000011811Gallus gallus
 SYNE2ENSG00000054654Homo sapiens
 Syne2ENSMUSG00000063450Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
syne1b / spectrin repeat containing, nuclear envelope 1b / SYNE1* / Q6ZWR6* / Q8NF91* / spectrin repeat containing nuclear envelope protein 1* / Mus musculus spectrin repeat containing, nuc...ENSDARG0000006306819
syne1a / spectrin repeat containing, nuclear envelope 1a / SYNE1* / Q6ZWR6* / Q8NF91* / spectrin repeat containing nuclear envelope protein 1* / Mus musculus spectrin repeat containing, nuc...ENSDARG0000000949918
syne2b / spectrin repeat containing, nuclear envelope 2b / SYNE2* / Q8WXH0* / Q6ZWQ0* / spectrin repeat containing, nuclear envelope 2* / spectrin repeat containing nuclear envelope protein 2*ENSDARG000000534848
flna / filamin A, alpha (actin binding protein 280) / P21333* / Q8BTM8* / filamin A*ENSDARG000000742014
flncb / filamin C, gamma b (actin binding protein 280) / FLNC* / Q14315* / filamin C*ENSDARG000000188204
flnca / filamin C, gamma a (actin binding protein 280) / FLNC* / Q14315* / Q8VHX6* / filamin C*ENSDARG000000185664
flnb / filamin B, beta (actin binding protein 278)ENSDARG000000922813
zgc:100997 / CLMN* / calmin* / Q8C5W0* / Q96JQ2*ENSDARG000000436672
si:ch211-137a8.2ENSDARG000000689262
CABZ01030862.1ENSDARG000000983742
clmn / calmin / Q8C5W0* / Q96JQ2*ENSDARG000000968672
zgc:165653ENSDARG000001047130
FP325130.1 / FLNB* / O75369* / filamin B*ENSDARG000001125270


Protein motifs (from Interpro)
Interpro ID Name
 IPR001589  Actinin-type actin-binding domain, conserved site
 IPR001715  Calponin homology domain
 IPR002017  Spectrin repeat
 IPR012315  KASH domain
 IPR018159  Spectrin/alpha-actinin
 IPR030266  Nesprin-2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0090286 cytoskeletal anchoring at nuclear membrane IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0034993 meiotic nuclear membrane microtubule tethering complex IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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