ENSDARG00000068926


Danio rerio

Features
Gene ID: ENSDARG00000068926
  
Biological name :si:ch211-137a8.2
  
Synonyms : si:ch211-137a8.2
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 29024895
Gene end: 29071870
  
Corresponding Affymetrix probe sets: Dr.13244.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000112580
Ensembl peptide - ENSDARP00000123287
Ensembl peptide - ENSDARP00000118645
NCBI entrez gene - 777613     See in Manteia.
RefSeq - NM_001328091
RefSeq - XM_009291677
RefSeq Peptide - NP_001315020
swissprot - F1Q5Y7
swissprot - E9QE38
swissprot - E9QCM4
ZFIN ID - ZDB-GENE-061103-172
Ensembl - ENSDARG00000068926
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch211-207i1.2 / SYNE2* / Q8WXH0* / Q6ZWQ0* / spectrin repeat containing, nuclear envelope 2* / spectrin repeat containing nuclear envelope protein 2*ENSDARG0000003010728
syne1b / spectrin repeat containing, nuclear envelope 1b / SYNE1* / Q6ZWR6* / Q8NF91* / spectrin repeat containing nuclear envelope protein 1* / Mus musculus spectrin repeat containing, nuc...ENSDARG0000006306827
syne1a / spectrin repeat containing, nuclear envelope 1a / SYNE1* / Q6ZWR6* / Q8NF91* / spectrin repeat containing nuclear envelope protein 1* / Mus musculus spectrin repeat containing, nuc...ENSDARG0000000949926
syne2b / spectrin repeat containing, nuclear envelope 2b / SYNE2* / Q8WXH0* / Q6ZWQ0* / spectrin repeat containing, nuclear envelope 2* / spectrin repeat containing nuclear envelope protein 2*ENSDARG0000005348426
flna / filamin A, alpha (actin binding protein 280) / P21333* / Q8BTM8* / filamin A*ENSDARG0000007420110
flncb / filamin C, gamma b (actin binding protein 280) / FLNC* / Q14315* / filamin C*ENSDARG0000001882010
flnca / filamin C, gamma a (actin binding protein 280) / FLNC* / Q14315* / Q8VHX6* / filamin C*ENSDARG000000185669
flnb / filamin B, beta (actin binding protein 278)ENSDARG000000922817
zgc:100997 / CLMN* / calmin* / Q8C5W0* / Q96JQ2*ENSDARG000000436675
CABZ01030862.1ENSDARG000000983744
clmn / calmin / Q8C5W0* / Q96JQ2*ENSDARG000000968674
FP325130.1 / FLNB* / O75369* / filamin B*ENSDARG000001125272
zgc:165653ENSDARG000001047131


Protein motifs (from Interpro)
Interpro ID Name
 IPR002017  Spectrin repeat
 IPR012315  KASH domain
 IPR018159  Spectrin/alpha-actinin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0090286 cytoskeletal anchoring at nuclear membrane IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0034993 meiotic nuclear membrane microtubule tethering complex IEA
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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