ENSG00000133706


Homo sapiens

Features
Gene ID: ENSG00000133706
  
Biological name :LARS
  
Synonyms : LARS / leucyl-tRNA synthetase / Q9P2J5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q32
Gene start: 146113038
Gene end: 146182660
  
Corresponding Affymetrix probe sets: 217810_x_at (Human Genome U133 Plus 2.0 Array)   222427_s_at (Human Genome U133 Plus 2.0 Array)   222428_s_at (Human Genome U133 Plus 2.0 Array)   223888_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000481381
Ensembl peptide - ENSP00000274562
Ensembl peptide - ENSP00000377954
Ensembl peptide - ENSP00000426005
NCBI entrez gene - 51520     See in Manteia.
OMIM - 151350
RefSeq - XM_011537656
RefSeq - NM_001317964
RefSeq - NM_001317965
RefSeq - NM_016460
RefSeq - NM_020117
RefSeq Peptide - NP_001304893
RefSeq Peptide - NP_001304894
RefSeq Peptide - NP_057544
RefSeq Peptide - NP_064502
swissprot - Q9P2J5
swissprot - A0A087WXY1
Ensembl - ENSG00000133706
  
Related genetic diseases (OMIM): 615438 - ?Infantile liver failure syndrome 1, 615438
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 larsaENSDARG00000090988Danio rerio
 larsbENSDARG00000019280Danio rerio
 LARSENSGALG00000007494Gallus gallus
 LarsENSMUSG00000024493Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001412  Aminoacyl-tRNA synthetase, class I, conserved site
 IPR002300  Aminoacyl-tRNA synthetase, class Ia
 IPR004493  Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic
 IPR009008  Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain
 IPR009080  Aminoacyl-tRNA synthetase, class Ia, anticodon-binding
 IPR013155  Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding
 IPR014729  Rossmann-like alpha/beta/alpha sandwich fold
 IPR015413  Methionyl/Leucyl tRNA synthetase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0006418 tRNA aminoacylation for protein translation TAS
 biological_processGO:0006425 glutaminyl-tRNA aminoacylation IDA
 biological_processGO:0006429 leucyl-tRNA aminoacylation IBA
 biological_processGO:0006438 valyl-tRNA aminoacylation IBA
 biological_processGO:0006622 protein targeting to lysosome IMP
 biological_processGO:0008361 regulation of cell size IMP
 biological_processGO:0010507 negative regulation of autophagy IMP
 biological_processGO:0034198 cellular response to amino acid starvation IMP
 biological_processGO:0043547 positive regulation of GTPase activity IMP
 biological_processGO:0071230 cellular response to amino acid stimulus IMP
 biological_processGO:0071233 cellular response to leucine IMP
 biological_processGO:0106074 aminoacyl-tRNA metabolism involved in translational fidelity IEA
 biological_processGO:1904263 positive regulation of TORC1 signaling IMP
 biological_processGO:1990253 cellular response to leucine starvation IMP
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005764 lysosome IMP
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0012505 endomembrane system IDA
 cellular_componentGO:0016604 nuclear body IDA
 cellular_componentGO:0017101 aminoacyl-tRNA synthetase multienzyme complex IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0002161 aminoacyl-tRNA editing activity IEA
 molecular_functionGO:0004812 aminoacyl-tRNA ligase activity IEA
 molecular_functionGO:0004819 glutamine-tRNA ligase activity IDA
 molecular_functionGO:0004823 leucine-tRNA ligase activity IBA
 molecular_functionGO:0004832 valine-tRNA ligase activity IBA
 molecular_functionGO:0005096 GTPase activator activity IMP
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016874 ligase activity IEA


Pathways (from Reactome)
Pathway description
SeMet incorporation into proteins
Cytosolic tRNA aminoacylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000293 Full cheeks 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001397 Hepatic steatosis 
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 HP:0001508 Failure to thrive 
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 HP:0001903 Anemia 
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 HP:0001972 Macrocytic anemia 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002194 Delayed gross motor development 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003256 Abnormalities of the clotting factors 
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 HP:0006554 Acute hepatic failure "Hepatic failure refers to the inability of the liver to perform its normal synthetic and metabolic functions, which can result in coagulopathy and alteration in the mental status of a previously healthy individual. Hepatic failure is defined as acute if there is onset of encephalopathy within 8 weeks of the onset of symptoms in a patient with a previously healthy liver." [HPO:curators]
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 HP:0010511 Increased length of toes "The presence of abnormally long toes." [HPO:curators]
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 HP:0100807 Long fingers "The middle finger is more than 2 SD above the mean for newborns 27 to 41 weeks EGA or above the 97th centile for children from birth to 16 years of age AND the five digits retain their normal length proportions relative to each other (i.e., it is not the case that the middle finger is the only lengthened digit), or, Fingers that appear disproportionately long compared to the palm of the hand." [pmid:19125433]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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