ENSG00000134323


Homo sapiens

Features
Gene ID: ENSG00000134323
  
Biological name :MYCN
  
Synonyms : MYCN / MYCN proto-oncogene, bHLH transcription factor / P04198
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: p24.3
Gene start: 15940564
Gene end: 15947007
  
Corresponding Affymetrix probe sets: 209756_s_at (Human Genome U133 Plus 2.0 Array)   209757_s_at (Human Genome U133 Plus 2.0 Array)   211377_x_at (Human Genome U133 Plus 2.0 Array)   234376_at (Human Genome U133 Plus 2.0 Array)   242026_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000281043
Ensembl peptide - ENSP00000491476
NCBI entrez gene - 4613     See in Manteia.
OMIM - 164840
RefSeq - NM_005378
RefSeq - XM_017004168
RefSeq - NM_001293228
RefSeq - NM_001293231
RefSeq - NM_001293233
RefSeq Peptide - NP_001280157
RefSeq Peptide - NP_001280160
RefSeq Peptide - NP_001280162
RefSeq Peptide - NP_005369
swissprot - P04198
swissprot - A0A1W2PPD9
Ensembl - ENSG00000134323
  
Related genetic diseases (OMIM): 164280 - Feingold syndrome 1, 164280

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 mycnENSDARG00000006837Danio rerio
 MYCNENSGALG00000016462Gallus gallus
 MycnENSMUSG00000037169Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MYC / P01106 / MYC proto-oncogene, bHLH transcription factorENSG0000013699736
MYCL / P12524 / MYCL proto-oncogene, bHLH transcription factorENSG0000011699028


Protein motifs (from Interpro)
Interpro ID Name
 IPR002418  Transcription regulator Myc
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR012682  Transcription regulator Myc, N-terminal
 IPR036638  Helix-loop-helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001502 cartilage condensation IEA
 biological_processGO:0002053 positive regulation of mesenchymal cell proliferation IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II TAS
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0010628 positive regulation of gene expression IDA
 biological_processGO:0010629 negative regulation of gene expression IDA
 biological_processGO:0010942 positive regulation of cell death IEA
 biological_processGO:0030324 lung development IEA
 biological_processGO:0042733 embryonic digit morphogenesis IEA
 biological_processGO:0045607 regulation of inner ear auditory receptor cell differentiation IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048704 embryonic skeletal system morphogenesis IEA
 biological_processGO:0048712 negative regulation of astrocyte differentiation IEA
 biological_processGO:0048754 branching morphogenesis of an epithelial tube IEA
 biological_processGO:1903800 positive regulation of production of miRNAs involved in gene silencing by miRNA IC
 biological_processGO:2000378 negative regulation of reactive oxygen species metabolic process IEA
 cellular_componentGO:0000785 chromatin TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding TAS
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019900 kinase binding IPI
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000232 Everted lower lip 
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 HP:0000237 Small anterior fontanelle "Abnormally decreased size of the anterior fontanelle with respect to age-dependent norms." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000269 Prominent occiput 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000324 Facial asymmetry 
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 HP:0000325 Triangular facies 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000365 Hearing loss 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000437 Flat nasal tip 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0001249 Mental retardation 
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 HP:0001328 Learning disability 
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0001561 Polyhydramnios 
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 HP:0001605 Vocal cord paralysis 
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001734 Annular pancreas 
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 HP:0001746 Asplenia "Absence (aplasia) of the spleen." [HPO:curators]
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 HP:0001747 Accessory spleen "An accessory spleen is a round, iso-echogenic, homogenic and smooth structure and is seen as a normal varient mostly on the medial contour of the spleen, near the hilus or around the lower pole. This has no pathogenic relevance." [HPO:curators]
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 HP:0001748 Polysplenia "Polysplenia is a congenital disease manifested by multiple small accessory spleens." [HPO:curators]
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 HP:0001831 Brachydactyly (feet) 
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 HP:0002032 Esophageal atresia "A developmental defect resulting in complete obliteration of the lumen of the esophagus such that the esophagus ends in a blind pouch rather than connecting to the stomach." [HPO:curators]
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 HP:0002247 Duodenal atresia "A developmental defect resulting in complete obliteration of the duodenal lumen, that is, an abnormal closure of the duodenum." [HPO:curator]
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 HP:0002575 Tracheoesophageal fistula "An abnormal connection (fistula) between the esophagus and the trachea." [HPO:curators]
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 HP:0004375 Neoplasia of the nervous system 
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 HP:0004691 2-3 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes two and three." [HPO:sdoelken]
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 HP:0004692 4-5 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes four and five." [HPO:sdoelken]
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 HP:0009161 Aplasia/Hypoplasia of the middle phalanx of the 5th finger "Absence or underdevelopment (hypoplasia) of the middle phalanx of the little (5th) finger." [HPO:curators]
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 HP:0009568 Aplasia/Hypoplasia of the middle phalanx of the 2nd finger 
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 HP:0011976 Elevated urinary catecholamines "An increased concentration of `catecholamine` (CHEBI:33567) in the urine." [HPO:probinson]
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 HP:0012471 Thick vermilion border "Increased width of the "skin of vermilion border region of upper lip" (FMA:312645)." [HPO:probinson]
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 HP:0012745 Short palpebral fissure "Distance between the medial and lateral canthi is more than 2 SD below the mean for age (objective); or, apparently reduced length of the palpebral fissures." [pmid:19125427]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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