ENSG00000135100


Homo sapiens

Features
Gene ID: ENSG00000135100
  
Biological name :HNF1A
  
Synonyms : HNF1A / HNF1 homeobox A / P20823
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q24.31
Gene start: 120978543
Gene end: 121002512
  
Corresponding Affymetrix probe sets: 210515_at (Human Genome U133 Plus 2.0 Array)   216930_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000443112
Ensembl peptide - ENSP00000443964
Ensembl peptide - ENSP00000483994
Ensembl peptide - ENSP00000481967
Ensembl peptide - ENSP00000476181
Ensembl peptide - ENSP00000453965
Ensembl peptide - ENSP00000445445
Ensembl peptide - ENSP00000257555
Ensembl peptide - ENSP00000438565
Ensembl peptide - ENSP00000438804
Ensembl peptide - ENSP00000439721
Ensembl peptide - ENSP00000440361
NCBI entrez gene - 6927     See in Manteia.
OMIM - 142410
RefSeq - NM_000545
RefSeq - NM_001306179
RefSeq - XM_005253931
RefSeq Peptide - NP_000536
RefSeq Peptide - NP_001293108
swissprot - F5H0K0
swissprot - F5H3Z5
swissprot - E0YMJ1
swissprot - P20823
swissprot - U3KQS6
swissprot - H0YND5
swissprot - E0YMI9
swissprot - A0A0A0MTK8
swissprot - A0A0A0MQU7
swissprot - A0A087WYP0
Ensembl - ENSG00000135100
  
Related genetic diseases (OMIM): 612520 - Diabetes mellitus, insulin-dependent, 20, 612520
  142330 - Hepatic adenoma, somatic, 142330
  600496 - MODY, type III, 600496
  144700 - Renal cell carcinoma, 144700
  222100 - {Diabetes mellitus, insulin-dependent}, 222100
  125853 - {Diabetes mellitus, noninsulin-dependent, 2}, 125853

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HNF1AENSGALG00000006968Gallus gallus
 Hnf1aENSMUSG00000029556Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HNF1B / P35680 / HNF1 homeobox BENSG0000027541048
HMBOX1 / Q6NT76 / homeobox containing 1ENSG0000014742113


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR006897  Hepatocyte nuclear factor 1, beta isoform, C-terminal
 IPR006898  Hepatocyte nuclear factor 1, alpha isoform C-terminal
 IPR006899  Hepatocyte nuclear factor 1, N-terminal
 IPR009057  Homeobox-like domain superfamily
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily
 IPR023219  Hepatocyte nuclear factor 1, N-terminal domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001779 natural killer cell differentiation IDA
 biological_processGO:0001824 blastocyst development IEA
 biological_processGO:0001889 liver development IEA
 biological_processGO:0001890 placenta development IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006633 fatty acid biosynthetic process IEA
 biological_processGO:0006699 bile acid biosynthetic process IEA
 biological_processGO:0006783 heme biosynthetic process IEA
 biological_processGO:0006979 response to oxidative stress IEA
 biological_processGO:0008104 protein localization IEA
 biological_processGO:0008203 cholesterol metabolic process IEA
 biological_processGO:0009749 response to glucose IEA
 biological_processGO:0015721 bile acid and bile salt transport IEA
 biological_processGO:0015908 fatty acid transport IEA
 biological_processGO:0016573 histone acetylation IEA
 biological_processGO:0030073 insulin secretion IEA
 biological_processGO:0030111 regulation of Wnt signaling pathway IEA
 biological_processGO:0030326 embryonic limb morphogenesis IEA
 biological_processGO:0031018 endocrine pancreas development IEA
 biological_processGO:0035623 renal glucose absorption IEA
 biological_processGO:0042593 glucose homeostasis IEA
 biological_processGO:0043691 reverse cholesterol transport IEA
 biological_processGO:0045453 bone resorption IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0046323 glucose import IEA
 biological_processGO:0046883 regulation of hormone secretion IEA
 biological_processGO:0048341 paraxial mesoderm formation IEA
 biological_processGO:0048608 reproductive structure development IEA
 biological_processGO:0050796 regulation of insulin secretion IEA
 biological_processGO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter IGI
 biological_processGO:0060395 SMAD protein signal transduction IEA
 cellular_componentGO:0001750 photoreceptor outer segment IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0045120 pronucleus IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001221 transcription cofactor binding IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003690 double-stranded DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IDA
 molecular_functionGO:0046982 protein heterodimerization activity IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
Regulation of gene expression in beta cells


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000147 polycystic ovaries 
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 HP:0000713 Agitation 
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 HP:0000825 Hyperinsulinemic hypoglycemia 
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0000980 Pallor 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001254 Lethargy 
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 HP:0001259 Coma 
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001520 Large for gestational age "The term large for gestational age applies to babies whose birth weight lies above the 90th percentile for that gestational age." [HPO:curators]
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 HP:0001649 Tachycardia "A rapid heartrate that exceeds the range of the normal resting heartrate for age." [HPO:curators]
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 HP:0001985 Hypoketotic hypoglycemia 
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 HP:0001998 Neonatal hypoglycemia 
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 HP:0002013 Vomiting 
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 HP:0002014 Diarrhea 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002329 Drowsiness 
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 HP:0002344 Progressive neurologic deterioration 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003074 Hyperglycemia 
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 HP:0003162 Fasting hypoglycemia 
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 HP:0003593 Early onset 
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 HP:0003745 Sporadic 
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 HP:0004359 Abnormality of fatty-acid metabolism 
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 HP:0004510 Islets of Langerhans hyperplasia 
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 HP:0004904 Insulin-dependent maturity-onset diabetes of the young 
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 HP:0005584 Renal cell carcinoma "Renal cell carcinoma (also known as hypernephroma) is the most common form of kidney cancer arising from the proximal renal tubule. The tissue of origin for renal cell carcinoma is the proximal renal tubular epithelium. Renal cell carcinoma can be classified as 1) clear cell carcinoma, 2) papillary carcinoma, 3) chromophobe renal carcinoma, and 4) collecting duct carcinoma." [HPO:curators]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0012028 Hepatocellular adenoma "A benign tumor of the liver of presumably epithelial origin." [HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0100651 Diabetes mellitus Type I 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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