ENSG00000275410


Homo sapiens

Features
Gene ID: ENSG00000275410
  
Biological name :HNF1B
  
Synonyms : HNF1B / HNF1 homeobox B / P35680
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: q12
Gene start: 37686432
Gene end: 37745247
  
Corresponding Affymetrix probe sets: 205313_at (Human Genome U133 Plus 2.0 Array)   208135_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000477524
Ensembl peptide - ENSP00000480291
Ensembl peptide - ENSP00000478682
Ensembl peptide - ENSP00000482711
Ensembl peptide - ENSP00000482529
Ensembl peptide - ENSP00000481245
NCBI entrez gene - 6928     See in Manteia.
OMIM - 189907
RefSeq - XM_011525164
RefSeq - NM_000458
RefSeq - NM_001165923
RefSeq - NM_001304286
RefSeq - XM_011525160
RefSeq - XM_011525161
RefSeq - XM_011525162
RefSeq - XM_011525163
RefSeq Peptide - NP_000449
RefSeq Peptide - NP_001159395
RefSeq Peptide - NP_001291215
swissprot - E0YMJ8
swissprot - E0YMJ6
swissprot - A0A0C4DGS8
swissprot - A0A087WZC2
swissprot - P35680
swissprot - Q6FHW6
swissprot - A0A087WXS2
Ensembl - ENSG00000275410
  
Related genetic diseases (OMIM): 125853 - Diabetes mellitus, noninsulin-dependent, 125853
  137920 - Renal cysts and diabetes syndrome, 137920
  144700 - {Renal cell carcinoma}, 144700

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hnf1baENSDARG00000006615Danio rerio
 hnf1bbENSDARG00000022295Danio rerio
 HNF1BENSGALG00000005504Gallus gallus
 Hnf1bENSMUSG00000020679Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HNF1A / P20823 / HNF1 homeobox AENSG0000013510055
HMBOX1 / Q6NT76 / homeobox containing 1ENSG0000014742118


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR006897  Hepatocyte nuclear factor 1, beta isoform, C-terminal
 IPR006899  Hepatocyte nuclear factor 1, N-terminal
 IPR009057  Homeobox-like domain superfamily
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily
 IPR023219  Hepatocyte nuclear factor 1, N-terminal domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001714 endodermal cell fate specification IEA
 biological_processGO:0001822 kidney development IMP
 biological_processGO:0001826 inner cell mass cell differentiation IEA
 biological_processGO:0001889 liver development IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007219 Notch signaling pathway IEA
 biological_processGO:0007492 endoderm development IEA
 biological_processGO:0009743 response to carbohydrate IEA
 biological_processGO:0009749 response to glucose IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0014070 response to organic cyclic compound IEA
 biological_processGO:0030073 insulin secretion IEA
 biological_processGO:0030111 regulation of Wnt signaling pathway IEA
 biological_processGO:0030902 hindbrain development IEA
 biological_processGO:0032922 circadian regulation of gene expression IEA
 biological_processGO:0035565 regulation of pronephros size IMP
 biological_processGO:0039020 pronephric nephron tubule development IGI
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0042663 regulation of endodermal cell fate specification IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048557 embryonic digestive tract morphogenesis IEA
 biological_processGO:0048598 embryonic morphogenesis IEA
 biological_processGO:0048754 branching morphogenesis of an epithelial tube IEA
 biological_processGO:0048793 pronephros development IMP
 biological_processGO:0050673 epithelial cell proliferation IEA
 biological_processGO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter IDA
 biological_processGO:0060429 epithelium development IEA
 biological_processGO:0060677 ureteric bud elongation IEA
 biological_processGO:0060993 kidney morphogenesis IEA
 biological_processGO:0061017 hepatoblast differentiation IEA
 biological_processGO:0061296 negative regulation of mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis IEA
 biological_processGO:0065004 protein-DNA complex assembly IEA
 biological_processGO:0070365 hepatocyte differentiation IEA
 biological_processGO:0072095 regulation of branch elongation involved in ureteric bud branching IEA
 biological_processGO:0072164 mesonephric tubule development IEA
 biological_processGO:0072176 nephric duct development IEA
 biological_processGO:0072177 mesonephric duct development IEA
 biological_processGO:0072179 nephric duct formation IEA
 biological_processGO:0072181 mesonephric duct formation IEA
 biological_processGO:1900212 negative regulation of mesenchymal cell apoptotic process involved in metanephros development IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005667 transcription factor complex IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0000987 proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA
 molecular_functionGO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
Regulation of gene expression in late stage (branching morphogenesis) pancreatic bud precursor cells
Regulation of gene expression in early pancreatic precursor cells


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
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 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000013 Hypoplastic uterus 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000049 Shawl scrotum "A condition in which the upper scrotal skin rises over the base of the penis." [HPO:curators]
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 HP:0000070 Ureterocele 
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 HP:0000074 Ureteropelvic junction obstruction 
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 HP:0000083 Renal failure 
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 HP:0000085 Horseshoe kidney 
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 HP:0000089 Renal hypoplasia 
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 HP:0000093 Proteinuria 
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 HP:0000104 Renal agenesis 
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 HP:0000107 Renal cysts 
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 HP:0000122 Unilateral renal agenesis 
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 HP:0000239 Large fontanelles "In newborns, the two frontal bones, two parietal bones, and one occipital bone are joined by fibrous sutures, which form a small posterior fontanelle, and a larger, diamond-shaped anterior fontanelle. These regions allow for the skull to pass the birth canal and for later growth. The fontanelles gradually ossify, whereby the posterior fontanelle usually closes by eight weeks and the anterior fontanelle by the 9th to 16th month of age. Large fontanelles are diagnosed if the fontanelles are larger than age-dependent norms." [HPO:curators]
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000717 Autism 
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 HP:0000787 Kidney stones 
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 HP:0000813 Bicornuate uterus 
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 HP:0000819 Diabetes mellitus 
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 HP:0000821 Hypothyroidism 
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 HP:0000833 Glucose intolerance 
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 HP:0000855 Insulin resistance 
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 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
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 HP:0001080 Biliary tract abnormality 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001369 Arthritis 
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 HP:0001397 Hepatic steatosis 
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 HP:0001562 Oligohydramnios 
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 HP:0001738 Exocrine pancreatic insufficiency 
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 HP:0001919 Acute renal failure 
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 HP:0001959 Polydipsia 
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 HP:0001994 Renal Fanconi syndrome 
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 HP:0001997 Gout 
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 HP:0002021 Pyloric stenosis 
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 HP:0002059 Cerebral atrophy 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002149 Hyperuricemia "An abnormally high level of uric acid in the blood." [HPO:curators]
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 HP:0002463 Language impairment 
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 HP:0002594 Pancreatic hypoplasia 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003076 Glycosuria "The excretion of abnormal amounts of glucose in the urine, generally resulting in osmotic diuresis." [HPO:curators]
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 HP:0003259 Increased creatinine 
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 HP:0003584 Late onset 
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 HP:0003674 Age of onset 
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 HP:0003774 End stage renal disease 
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 HP:0003812 Phenotypic variability 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004379 Abnormality of alkaline phosphatase activity "An abnormality of `alkaline phosphatase activity` (GO:0004035)." [HPO:probinson]
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 HP:0004904 Insulin-dependent maturity-onset diabetes of the young 
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 HP:0005563 Decreased numbers of glomeruli 
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 HP:0005584 Renal cell carcinoma "Renal cell carcinoma (also known as hypernephroma) is the most common form of kidney cancer arising from the proximal renal tubule. The tissue of origin for renal cell carcinoma is the proximal renal tubular epithelium. Renal cell carcinoma can be classified as 1) clear cell carcinoma, 2) papillary carcinoma, 3) chromophobe renal carcinoma, and 4) collecting duct carcinoma." [HPO:curators]
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 HP:0005692 Joint hyperflexibility 
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0008678 Renal hypoplasia/aplasia 
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 HP:0009715 Papillary cystadenoma of the epididymis "Papillary cystadenomas of the epididymis are partially or completely cystic or solid lesions, between 1-3 cm in diameter and arise from the efferent duct epithelium of the head of epididymis." [HPO:curators]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012092 Abnormality of exocrine pancreas physiology "A functional anomaly of the acinar gland portion of the pancreas that secretes digestive enzymes." [HPO:probinson]
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 HP:0012093 Abnormality of endocrine pancreas physiology "A function abnormality of the endocrine pancreas." [HPO:probinson]
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 HP:0012157 Subcortical cerebral atrophy "Atrophy of the cerebral subcortical white and gray matter, termed subcortical atrophy, reflects loss of nerve cells in the basal ganglia or fibers in the deep white matter." [HPO:probinson, pmid:20813998]
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 HP:0012207 Reduced sperm motility "An abnormal reduction in the mobility of ejaculated sperm." [HPO:probinson]
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 HP:0012873 Absent vas deferens "Aplasia (congenital absence) of the vas deferens." [HPO:probinson]
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 HP:0030424 Epididymal cyst "A smooth, extratesticular, spherical cyst in the head of the epididymis." [HPO:probinson, pmid:14767330]
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 HP:0030997 Atretic vas deferens "Abnormal closure or blockage of the vas deferens." []
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 HP:0100611 Hypoplastic glomerulocystic kidney disease 
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 HP:0100800 Aplasia/Hypoplasia of the pancreas "A congential underdevelopment (aplasia or hypoplasia) of the pancreas." [HPO:sdoelken]
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 HP:0100801 Pancreatic aplasia "`Aplasia` (MPATH:58) of the `pancreas` (FMA:7198)." [HPO:sdoelken]
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 HP:0100820 Glomerulopathy "Inflammatory or noninflammatory diseases affecting the glomeruli of the nephron." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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