ENSG00000137822


Homo sapiens

Features
Gene ID: ENSG00000137822
  
Biological name :TUBGCP4
  
Synonyms : Q9UGJ1 / TUBGCP4 / tubulin gamma complex associated protein 4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: 1
Band: q15.3
Gene start: 43369221
Gene end: 43409771
  
Corresponding Affymetrix probe sets: 211337_s_at (Human Genome U133 Plus 2.0 Array)   227907_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000456648
Ensembl peptide - ENSP00000455993
Ensembl peptide - ENSP00000456550
Ensembl peptide - ENSP00000260383
Ensembl peptide - ENSP00000454696
Ensembl peptide - ENSP00000454915
Ensembl peptide - ENSP00000455474
Ensembl peptide - ENSP00000455555
NCBI entrez gene - 27229     See in Manteia.
OMIM - 609610
RefSeq - XM_017022078
RefSeq - NM_001286414
RefSeq - NM_014444
RefSeq - XM_011521454
RefSeq - XM_011521455
RefSeq Peptide - NP_001273343
RefSeq Peptide - NP_055259
swissprot - H3BN56
swissprot - H3BNL9
swissprot - H3BPU4
swissprot - H3BQ12
swissprot - H3BS59
swissprot - H3BQY4
swissprot - Q9UGJ1
Ensembl - ENSG00000137822
  
Related genetic diseases (OMIM): 616335 - Microcephaly and chorioretinopathy, autosomal recessive, 3, 616335
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tubgcp4ENSDARG00000005374Danio rerio
 TUBGCP4ENSGALG00000008549Gallus gallus
 Q9D4F8ENSMUSG00000027263Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q96RT7 / TUBGCP6 / tubulin gamma complex associated protein 6ENSG0000012815922
Q96RT8 / TUBGCP5 / tubulin gamma complex associated protein 5ENSG0000027583518
Q9BSJ2 / TUBGCP2 / tubulin gamma complex associated protein 2ENSG0000013064016
Q96CW5 / TUBGCP3 / tubulin gamma complex associated protein 3ENSG0000012621615


Protein motifs (from Interpro)
Interpro ID Name
 IPR007259  Gamma-tubulin complex component protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000226 microtubule cytoskeleton organization IEA
 biological_processGO:0007020 microtubule nucleation IEA
 biological_processGO:0031122 cytoplasmic microtubule organization IBA
 biological_processGO:0051298 centrosome duplication IBA
 biological_processGO:0051321 meiotic cell cycle IBA
 biological_processGO:0051415 microtubule nucleation by interphase microtubule organizing center IBA
 biological_processGO:0065003 protein-containing complex assembly NAS
 biological_processGO:0090307 mitotic spindle assembly IBA
 cellular_componentGO:0000922 spindle pole IEA
 cellular_componentGO:0000923 equatorial microtubule organizing center IBA
 cellular_componentGO:0000930 gamma-tubulin complex IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome TAS
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 cellular_componentGO:0008274 gamma-tubulin ring complex NAS
 cellular_componentGO:0015630 microtubule cytoskeleton TAS
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0055037 recycling endosome IDA
 molecular_functionGO:0005200 structural constituent of cytoskeleton IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043015 gamma-tubulin binding IEA
 molecular_functionGO:0051011 microtubule minus-end binding IBA


Pathways (from Reactome)
Pathway description
Recruitment of mitotic centrosome proteins and complexes
Recruitment of NuMA to mitotic centrosomes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000307 Pointed chin 
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000411 Protruding ears 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000499 Abnormality of the eyelashes "An abnormality of the `eyelashes` (FMA:53669)." [HPO:probinson]
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 HP:0000505 Impaired vision 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001999 Facial dysmorphism 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002269 Neuronal migration disorder 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004422 Biparietal narrowing "A narrowing of the biparietal diameter (i.e., of the transverse distance between the protuberances of the two parietal bones of the skull)." [HPO:curators]
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 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
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 HP:0007663 Decreased central vision 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007731 Chorioretinal dysplasia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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