ENSG00000138095


Homo sapiens

Features
Gene ID: ENSG00000138095
  
Biological name :LRPPRC
  
Synonyms : leucine rich pentatricopeptide repeat containing / LRPPRC / P42704
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: p21
Gene start: 43886508
Gene end: 43996005
  
Corresponding Affymetrix probe sets: 1557360_at (Human Genome U133 Plus 2.0 Array)   211615_s_at (Human Genome U133 Plus 2.0 Array)   211971_s_at (Human Genome U133 Plus 2.0 Array)   230194_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000260665
Ensembl peptide - ENSP00000414207
Ensembl peptide - ENSP00000403637
Ensembl peptide - ENSP00000386562
Ensembl peptide - ENSP00000386234
NCBI entrez gene - 10128     See in Manteia.
OMIM - 607544
RefSeq - XM_017003117
RefSeq - NM_133259
RefSeq - XM_006711915
RefSeq - XM_006711916
RefSeq - XM_011532473
RefSeq Peptide - NP_573566
swissprot - P42704
swissprot - E5KNY5
swissprot - A0A0C4DG06
swissprot - C9JCA9
swissprot - H7C3W8
swissprot - B8ZZ38
Ensembl - ENSG00000138095
  
Related genetic diseases (OMIM): 220111 - Leigh syndrome, French-Canadian type, 220111
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lrpprcENSDARG00000043970Danio rerio
 LRPPRCENSGALG00000009967Gallus gallus
 LrpprcENSMUSG00000024120Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002885  Pentatricopeptide repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR033443  Pentacotripeptide-repeat region of PRORP
 IPR033490  Leucine-rich PPR motif-containing protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000961 negative regulation of mitochondrial RNA catabolic process IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0009451 RNA modification IBA
 biological_processGO:0047497 mitochondrion transport along microtubule TAS
 biological_processGO:0051028 mRNA transport IEA
 biological_processGO:0070129 regulation of mitochondrial translation IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 cellular_componentGO:0000794 condensed nuclear chromosome IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005637 nuclear inner membrane IEA
 cellular_componentGO:0005640 nuclear outer membrane IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0005856 cytoskeleton IDA
 cellular_componentGO:0005874 microtubule IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0042645 mitochondrial nucleoid IDA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0004519 endonuclease activity IBA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008017 microtubule binding TAS
 molecular_functionGO:0031625 ubiquitin protein ligase binding IPI
 molecular_functionGO:0048487 beta-tubulin binding IDA


Pathways (from Reactome)
Pathway description
TP53 Regulates Metabolic Genes
Respiratory electron transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000294 Low frontal hairline "A condition in which the scalp hair is present at lower than usual areas of the forehead." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000750 Impaired language development 
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 HP:0001007 Hirsutism "Abnormally increased hair growth." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001414 Microvesicular steatosis 
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 HP:0001508 Failure to thrive 
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 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
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 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
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 HP:0002171 Gliosis 
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 HP:0002490 Increased CSF lactate "Increased concentration of lactate in the cerebrospinal fluid." [HPO:curators]
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 HP:0002553 Arched eyebrows 
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 HP:0002789 Tachypnea 
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 HP:0003074 Hyperglycemia 
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003593 Early onset 
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 HP:0006565 Liver biopsy shows increased lipid droplets 
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 HP:0007305 Cns demyelination 
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 HP:0011096 Peripheral demyelination "A loss of myelin from the internode regions along myelinated nerve fibers of the peripheral nervous system." [HPO:probinson]
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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