ENSG00000140718


Homo sapiens

Features
Gene ID: ENSG00000140718
  
Biological name :FTO
  
Synonyms : FTO / FTO, alpha-ketoglutarate dependent dioxygenase / Q9C0B1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: q12.2
Gene start: 53701692
Gene end: 54158512
  
Corresponding Affymetrix probe sets: 209702_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000489638
Ensembl peptide - ENSP00000418823
Ensembl peptide - ENSP00000489641
Ensembl peptide - ENSP00000490980
Ensembl peptide - ENSP00000490516
Ensembl peptide - ENSP00000490426
Ensembl peptide - ENSP00000490300
Ensembl peptide - ENSP00000490047
Ensembl peptide - ENSP00000489936
Ensembl peptide - ENSP00000489904
Ensembl peptide - ENSP00000489891
Ensembl peptide - ENSP00000489886
Ensembl peptide - ENSP00000489714
Ensembl peptide - ENSP00000268349
Ensembl peptide - ENSP00000415636
Ensembl peptide - ENSP00000417422
Ensembl peptide - ENSP00000417843
Ensembl peptide - ENSP00000418424
NCBI entrez gene - 79068     See in Manteia.
OMIM - 610966
RefSeq - XM_017023657
RefSeq - NM_001080432
RefSeq - XM_011523313
RefSeq - XM_011523314
RefSeq - XM_011523315
RefSeq - XM_011523316
RefSeq - XM_017023654
RefSeq - XM_017023655
RefSeq - XM_017023656
RefSeq Peptide - NP_001073901
swissprot - A0A1B0GTC5
swissprot - F8WCB8
swissprot - A0A1B0GTC3
swissprot - Q9C0B1
swissprot - X6R3I0
swissprot - A0A1B0GVH5
swissprot - A0A1B0GV98
swissprot - A0A1B0GUY7
swissprot - A0A1B0GUC3
swissprot - A0A1B0GU26
swissprot - A0A1B0GTZ8
swissprot - A0A1B0GTY5
swissprot - A0A1B0GTI3
swissprot - A0A1B0GTY1
Ensembl - ENSG00000140718
  
Related genetic diseases (OMIM): 612460 - {Obesity, susceptibility to, BMIQ14}, 612460
  612938 - Growth retardation, developmental delay, facial dysmorphism, 612938
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ftoENSDARG00000044216Danio rerio
 FTOENSGALG00000041036Gallus gallus
 FtoENSMUSG00000055932Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR024366  Alpha-ketoglutarate-dependent dioxygenase FTO, C-terminal
 IPR024367  Alpha-ketoglutarate-dependent dioxygenase FTO, catalytic domain
 IPR032868  Alpha-ketoglutarate-dependent dioxygenase FTO
 IPR037151  Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001659 temperature homeostasis IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006307 DNA dealkylation involved in DNA repair IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0010883 regulation of lipid storage IMP
 biological_processGO:0035552 oxidative single-stranded DNA demethylation IEA
 biological_processGO:0035553 oxidative single-stranded RNA demethylation IEA
 biological_processGO:0040014 regulation of multicellular organism growth IEA
 biological_processGO:0042245 RNA repair IEA
 biological_processGO:0044065 regulation of respiratory system process IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0060612 adipose tissue development IEA
 biological_processGO:0070350 regulation of white fat cell proliferation IEA
 biological_processGO:0070989 oxidative demethylation IDA
 biological_processGO:0080111 DNA demethylation IDA
 biological_processGO:0090335 regulation of brown fat cell differentiation IMP
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0008198 ferrous iron binding IDA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0035515 oxidative RNA demethylase activity IEA
 molecular_functionGO:0035516 oxidative DNA demethylase activity IEA
 molecular_functionGO:0043734 DNA-N1-methyladenine dioxygenase activity IDA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051213 dioxygenase activity IEA
 molecular_functionGO:1990931 RNA N6-methyladenosine dioxygenase activity IMP


Pathways (from Reactome)
Pathway description
Reversal of alkylation damage by DNA dioxygenases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000158 Macroglossia "Increased length and width of the tongue." [pmid:19125428]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
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 HP:0000238 Hydrocephalus 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000278 Retrognathia 
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 HP:0000280 Coarse facial features 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000470 Short neck 
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 HP:0000965 Cutis marmorata 
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 HP:0001156 Brachydactyly 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001305 Dandy-Walker malformation "A congenital brain malformation typically characterized by incomplete formation of the cerebellar vermis, dilation of the fourth ventricle, and enlargement of the posterior fossa. In layman s terms, Dandy Walker malformation is a cyst in the cerebellum (typically symmetrical) that is involved with the fourth ventricle. This may interfere with the body s ability to drain cerebrospinal fluid from the brain, resulting in hydrocephalus. Dandy Walker cysts are formed during early embryonic development, while the brain forms. The cyst in the cerebellum typically has several blood vessels running through it connecting to the brain, thereby prohibiting surgical removal." [HPO:curators]
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 HP:0001339 Lissencephaly "A congenital absence of the convolutions of the cerebral cortex and a poorly formed sylvian fissure." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001639 Hypertrophic cardiomyopathy 
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001792 Nail hypoplasia "Underdeveloped `fingernails` (FMA:54327) or `toenails` (FMA:54328)." [HPO:probinson]
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 HP:0002678 Skull asymmetry 
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 HP:0010808 Protruding tongue "Tongue extending beyond the alveolar ridges or teeth at rest." [pmid:19125428]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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