ENSG00000141012


Homo sapiens

Features
Gene ID: ENSG00000141012
  
Biological name :GALNS
  
Synonyms : galactosamine (N-acetyl)-6-sulfatase / GALNS / P34059
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: -1
Band: q24.3
Gene start: 88813734
Gene end: 88856970
  
Corresponding Affymetrix probe sets: 206335_at (Human Genome U133 Plus 2.0 Array)   236866_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000457921
Ensembl peptide - ENSP00000455174
Ensembl peptide - ENSP00000456884
Ensembl peptide - ENSP00000268695
Ensembl peptide - ENSP00000454484
Ensembl peptide - ENSP00000455006
NCBI entrez gene - 2588     See in Manteia.
OMIM - 612222
RefSeq - XM_017023113
RefSeq - NM_000512
RefSeq - NM_001323543
RefSeq - NM_001323544
RefSeq - XM_005256301
RefSeq - XM_011522982
RefSeq - XM_017023111
RefSeq - XM_017023112
RefSeq Peptide - NP_001310472
RefSeq Peptide - NP_001310473
RefSeq Peptide - NP_000503
swissprot - H3BSU9
swissprot - H3BV24
swissprot - P34059
swissprot - Q6MZF5
swissprot - H3BNU2
swissprot - H3BP66
Ensembl - ENSG00000141012
  
Related genetic diseases (OMIM): 253000 - Mucopolysaccharidosis IVA, 253000
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 galnsENSDARG00000051853Danio rerio
 GALNSENSGALG00000039673Gallus gallus
 GalnsENSMUSG00000015027Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ARSA / P15289 / arylsulfatase AENSG0000010029935
ARSD / P51689 / arylsulfatase DENSG0000000675634
ARSG / Q96EG1 / arylsulfatase GENSG0000014133734
STS / P08842 / steroid sulfataseENSG0000010184634
ARSE / P51690 / arylsulfatase E (chondrodysplasia punctata 1)ENSG0000015739933
ARSF / P54793 / arylsulfatase FENSG0000006209631
ARSH / Q5FYA8 / arylsulfatase family member HENSG0000020566731
ARSB / P15848 / arylsulfatase BENSG0000011327324
ARSI / Q5FYB1 / arylsulfatase family member IENSG0000018387623
ARSJ / Q5FYB0 / arylsulfatase family member JENSG0000018080122


Protein motifs (from Interpro)
Interpro ID Name
 IPR000917  Sulfatase, N-terminal
 IPR017849  Alkaline phosphatase-like, alpha/beta/alpha
 IPR017850  Alkaline-phosphatase-like, core domain superfamily
 IPR024607  Sulfatase, conserved site
 IPR035626  N-acetylgalactosamine-6-sulfatase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0042340 keratan sulfate catabolic process TAS
 biological_processGO:0043312 neutrophil degranulation TAS
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0035578 azurophil granule lumen TAS
 cellular_componentGO:0043202 lysosomal lumen TAS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0003943 N-acetylgalactosamine-4-sulfatase activity TAS
 molecular_functionGO:0008484 sulfuric ester hydrolase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0043890 N-acetylgalactosamine-6-sulfatase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Keratan sulfate degradation
MPS IV - Morquio syndrome A
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000023 Inguinal hernia 
Show

 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
Show

 HP:0000280 Coarse facial features 
Show

 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
Show

 HP:0000365 Hearing loss 
Show

 HP:0000670 Carious teeth 
Show

 HP:0000683 Grayish enamel 
Show

 HP:0000687 Widely spaced teeth 
Show

 HP:0000884 Prominent sternum 
Show

 HP:0000904 Flaring of rib cage "The presence of wide, concave anterior rib ends." [HPO:curators]
Show

 HP:0000926 Platyspondyly 
Show

 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
Show

 HP:0001223 Pointed proximal second through fifth metacarpals "All of the metacarpal bones of the hand have a pointed proximal appearance." [HPO:curators]
Show

 HP:0001388 Joint laxity 
Show

 HP:0001654 Abnormality of the heart valves "An abnormality of a `Cardiac valve` (FMA:7110)." [HPO:probinson]
Show

 HP:0002091 Restrictive lung disease 
Show

 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
Show

 HP:0002318 Cervical myelopathy 
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002673 Coxa valga "Coxa valga is a deformity of the hip in which the angle between the femoral shaft and the femoral neck is increased compared to age-adjusted values (about 150 degrees in newborns gradually reducing to 120-130 degrees in adults)." [HPO:curators]
Show

 HP:0002788 Recurrent upper respiratory tract infections 
Show

 HP:0002808 Kyphosis 
Show

 HP:0002857 Genu valgum 
Show

 HP:0003016 Metaphyseal widening "Abnormal widening of the metaphyseal regions of long bones." [HPO:curators]
Show

 HP:0003049 Ulnar deviation of the wrist 
Show

 HP:0003053 Epiphyseal deformities of tubular bones 
Show

 HP:0003277 Constricted iliac wings 
Show

 HP:0003300 Ovoid vertebral bodies 
Show

 HP:0003307 Hyperlordosis 
Show

 HP:0003308 Cervical subluxation "Partial dislocation of one or more intervertebral joints in the cervical spine." [HPO:curators]
Show

 HP:0003311 Hypoplastic odontoid process 
Show

 HP:0003521 Short stature, disproportionate (short trunk) 
Show

 HP:0003621 Juvenile onset 
Show

 HP:0007759 Corneal opacities, not impairing visual acuity 
Show

 HP:0012069 Keratan sulfate excretion in urine "An `increased concentration` (PATO:0001162) of `keratan sulfate` (CHEBI:60924) in the `urine` (FMA:12274)." [HPO:probinson]
Show

 HP:0012070 Chondroitin sulfate excretion in urine "An `increased concentration` (PATO:0001162) of `chondroitin sulfate (CHEBI:37397) in the `urine` (FMA:12274)." [HPO:probinson]
Show

 HP:0030865 Large elbow "Abnormal increased size of the elbow joint." [] {comment="HPO:probinson"}
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000141012 GALNS / P34059 / galactosamine (N-acetyl)-6-sulfatase  / -






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr