ENSG00000141380


Homo sapiens

Features
Gene ID: ENSG00000141380
  
Biological name :SS18
  
Synonyms : Q15532 / SS18 / SS18, nBAF chromatin remodeling complex subunit
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 18
Strand: -1
Band: q11.2
Gene start: 26016253
Gene end: 26091217
  
Corresponding Affymetrix probe sets: 202816_s_at (Human Genome U133 Plus 2.0 Array)   202817_s_at (Human Genome U133 Plus 2.0 Array)   209954_x_at (Human Genome U133 Plus 2.0 Array)   216684_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000464609
Ensembl peptide - ENSP00000464556
Ensembl peptide - ENSP00000464664
Ensembl peptide - ENSP00000464673
Ensembl peptide - ENSP00000269137
Ensembl peptide - ENSP00000269138
Ensembl peptide - ENSP00000414516
Ensembl peptide - ENSP00000438066
Ensembl peptide - ENSP00000441760
Ensembl peptide - ENSP00000462104
Ensembl peptide - ENSP00000462363
Ensembl peptide - ENSP00000462766
Ensembl peptide - ENSP00000462838
Ensembl peptide - ENSP00000463586
Ensembl peptide - ENSP00000463802
Ensembl peptide - ENSP00000463928
Ensembl peptide - ENSP00000463933
Ensembl peptide - ENSP00000463943
Ensembl peptide - ENSP00000464049
NCBI entrez gene - 6760     See in Manteia.
OMIM - 600192
RefSeq - XM_011526152
RefSeq - NM_001007559
RefSeq - NM_001308201
RefSeq - NM_005637
RefSeq - XM_006722527
RefSeq - XM_011526145
RefSeq - XM_011526147
RefSeq - XM_011526148
RefSeq - XM_011526149
RefSeq - XM_011526150
RefSeq - XM_011526151
RefSeq Peptide - NP_005628
RefSeq Peptide - NP_001007560
RefSeq Peptide - NP_001295130
swissprot - Q4VAX0
swissprot - X6R3J2
swissprot - A0A024RC40
swissprot - Q15532
swissprot - B4DLD3
swissprot - F5GWN1
swissprot - J3KRP6
swissprot - J3KT22
swissprot - J3KT74
swissprot - J3QLJ7
swissprot - J3QQM2
swissprot - J3QQW2
swissprot - J3QQW6
swissprot - J3QS72
swissprot - J3QQX5
swissprot - J3QSB3
swissprot - J3QSG1
Ensembl - ENSG00000141380
  
Related genetic diseases (OMIM): 600192 - Sarcoma, synovial
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ss18ENSDARG00000002970Danio rerio
 SS18ENSGALG00000015119Gallus gallus
 Ss18ENSMUSG00000037013Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O75177 / SS18L1 / SS18L1, nBAF chromatin remodeling complex subunitENSG0000018440258
Q9UHA2 / SS18L2 / SS18 like 2ENSG000000083249


Protein motifs (from Interpro)
Interpro ID Name
 IPR007726  SS18 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000226 microtubule cytoskeleton organization IEA
 biological_processGO:0000902 cell morphogenesis IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0035556 intracellular signal transduction IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0048013 ephrin receptor signaling pathway IEA
 biological_processGO:0097150 neuronal stem cell population maintenance IEA
 biological_processGO:1903506 regulation of nucleic acid-templated transcription IEA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005881 cytoplasmic microtubule IEA
 cellular_componentGO:0071564 npBAF complex IEA
 molecular_functionGO:0003713 transcription coactivator activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030374 nuclear receptor transcription coactivator activity IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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