ENSG00000141556


Homo sapiens

Features
Gene ID: ENSG00000141556
  
Biological name :TBCD
  
Synonyms : Q9BTW9 / TBCD / tubulin folding cofactor D
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: 1
Band: q25.3
Gene start: 82752064
Gene end: 82945922
  
Corresponding Affymetrix probe sets: 201759_at (Human Genome U133 Plus 2.0 Array)   211052_s_at (Human Genome U133 Plus 2.0 Array)   216128_at (Human Genome U133 Plus 2.0 Array)   229191_at (Human Genome U133 Plus 2.0 Array)   229192_s_at (Human Genome U133 Plus 2.0 Array)   229767_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000461680
Ensembl peptide - ENSP00000460949
Ensembl peptide - ENSP00000461167
Ensembl peptide - ENSP00000347719
Ensembl peptide - ENSP00000440671
Ensembl peptide - ENSP00000458365
Ensembl peptide - ENSP00000458512
Ensembl peptide - ENSP00000458535
Ensembl peptide - ENSP00000458556
Ensembl peptide - ENSP00000458599
Ensembl peptide - ENSP00000458916
Ensembl peptide - ENSP00000459063
Ensembl peptide - ENSP00000460450
NCBI entrez gene - 6904     See in Manteia.
OMIM - 604649
RefSeq - XM_017024990
RefSeq - NM_005993
RefSeq - XM_005256396
RefSeq - XM_005256399
RefSeq - XM_006722290
RefSeq - XM_006722291
RefSeq - XM_011523589
RefSeq - XM_011523590
RefSeq - XM_011523591
RefSeq - XM_011523593
RefSeq - XM_011523594
RefSeq - XM_011523595
RefSeq - XM_017024987
RefSeq Peptide - NP_005984
swissprot - Q9BTW9
swissprot - I3L120
swissprot - I3L131
swissprot - I3L143
swissprot - I3L163
swissprot - I3L1L0
swissprot - I3L1S3
swissprot - I3L3H4
swissprot - I3L439
swissprot - I3L4D2
swissprot - I3L500
swissprot - J3KR97
swissprot - I3L0V3
Ensembl - ENSG00000141556
  
Related genetic diseases (OMIM): 617193 - Encephalopathy, progressive, early-onset, with brain atrophy and thin corpus callosum, 617193
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tbcdENSDARG00000098749Danio rerio
 TBCDENSGALG00000001503Gallus gallus
 TbcdENSMUSG00000039230Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR022577  Tubulin-specific chaperone D, C-terminal
 IPR033162  Tubulin-folding cofactor D


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000278 mitotic cell cycle IMP
 biological_processGO:0006457 protein folding TAS
 biological_processGO:0007021 tubulin complex assembly IEA
 biological_processGO:0007023 post-chaperonin tubulin folding pathway IEA
 biological_processGO:0010812 negative regulation of cell-substrate adhesion ISS
 biological_processGO:0031115 negative regulation of microtubule polymerization IDA
 biological_processGO:0034333 adherens junction assembly IBA
 biological_processGO:0043547 positive regulation of GTPase activity IEA
 biological_processGO:0048667 cell morphogenesis involved in neuron differentiation IMP
 biological_processGO:0070830 bicellular tight junction assembly IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule TAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005912 adherens junction ISS
 cellular_componentGO:0005923 bicellular tight junction IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016328 lateral plasma membrane IBA
 cellular_componentGO:0030054 cell junction IEA
 molecular_functionGO:0005096 GTPase activator activity IEA
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0048487 beta-tubulin binding IEA
 molecular_functionGO:0051087 chaperone binding TAS


Pathways (from Reactome)
Pathway description
Post-chaperonin tubulin folding pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000297 Facial hypotonia 
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 HP:0000316 Hypertelorism 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000648 Optic atrophy 
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 HP:0000687 Widely spaced teeth 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001298 Encephalopathy 
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 HP:0001308 Tongue fasciculations 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0002019 Constipation 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002171 Gliosis 
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 HP:0002376 Developmental regression 
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 HP:0002506 Diffuse cerebral atrophy 
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 HP:0002510 Spastic tetraplegia "Spastic paralysis affecting all four limbs." [HPO:curators]
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 HP:0002529 Neuropathology shows neuronal loss in basal ganglia, brainstem, and cerebellum 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002804 Arthrogryposis multiplex congenita 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003429 Hypomyelination 
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 HP:0003828 Variable expressivity 
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 HP:0005484 Microcephaly, postnatal 
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 HP:0006829 Severe muscular hypotonia "A severe degree of muscular hypotonia characterized by markedly reduced muscle tone." [HPO:curators]
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 HP:0007366 Atrophy/Degeneration affecting the brainstem 
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0045075 Sparse eyebrow "Decreased density/number of eyebrow hairs." [HPO:skoehler]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000171530 TBCA / O75347 / tubulin folding cofactor A  / reaction
 ENSG00000284770 TBCE / Q15813 / tubulin folding cofactor E  / complex / reaction
 ENSG00000124659 TBCC / Q15814 / tubulin folding cofactor C  / complex / reaction






 

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