ENSG00000143183


Homo sapiens

Features
Gene ID: ENSG00000143183
  
Biological name :TMCO1
  
Synonyms : Q9UM00 / TMCO1 / transmembrane and coiled-coil domains 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: q24.1
Gene start: 165724293
Gene end: 165827755
  
Corresponding Affymetrix probe sets: 208715_at (Human Genome U133 Plus 2.0 Array)   208716_s_at (Human Genome U133 Plus 2.0 Array)   210768_x_at (Human Genome U133 Plus 2.0 Array)   211098_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000480514
Ensembl peptide - ENSP00000356856
Ensembl peptide - ENSP00000462588
Ensembl peptide - ENSP00000462300
Ensembl peptide - ENSP00000375975
Ensembl peptide - ENSP00000485789
Ensembl peptide - ENSP00000463105
Ensembl peptide - ENSP00000463951
Ensembl peptide - ENSP00000464127
NCBI entrez gene - 54499     See in Manteia.
OMIM - 614123
RefSeq - NM_001256164
RefSeq - NM_019026
RefSeq - NM_001256165
RefSeq Peptide - NP_001243094
RefSeq Peptide - NP_001243093
RefSeq Peptide - NP_061899
swissprot - Q9UM00
swissprot - J3KS45
swissprot - J3KTQ7
swissprot - J3QQY2
swissprot - J3QRB3
swissprot - J9JIE6
Ensembl - ENSG00000143183
  
Related genetic diseases (OMIM): 213980 - Craniofacial dysmorphism, skeletal anomalies, and mental retardation syndrome, 213980
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tmco1ENSDARG00000069099Danio rerio
 TMCO1ENSGALG00000033460Gallus gallus
 Tmco1ENSMUSG00000052428Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002809  Integral membrane protein EMC3/TMCO1-like
 IPR008559  Calcium load-activated calcium channel


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006816 calcium ion transport IEA
 biological_processGO:0006983 ER overload response IDA
 biological_processGO:0032469 endoplasmic reticulum calcium ion homeostasis IEA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030176 integral component of endoplasmic reticulum membrane IEA
 molecular_functionGO:0005262 calcium channel activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
Show

 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
Show

 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
Show

 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
Show

 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
Show

 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
Show

 HP:0000289 Wide philtrum 
Show

 HP:0000316 Hypertelorism 
Show

 HP:0000368 Low-set, posteriorly rotated ears 
Show

 HP:0000445 Broad nose 
Show

 HP:0000470 Short neck 
Show

 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
Show

 HP:0000494 Downward slanting palpebral fissures 
Show

 HP:0000574 Thick eyebrows 
Show

 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
Show

 HP:0000774 Narrow chest 
Show

 HP:0000892 Bifid ribs "A bifid rib refers to cleavage of the sternal end of a rib, usually unilateral. Bifid ribs are usually asymptomatic, and are often discovered incidentally by chest x-ray." [HPO:curators]
Show

 HP:0000902 Rib fusion 
Show

 HP:0000912 Sprengel anomaly "A complex deformity characterized by congenital elevation of the scapula." [HPO:curators]
Show

 HP:0001249 Mental retardation 
Show

 HP:0001320 Cerebellar vermis hypoplasia 
Show

 HP:0001561 Polyhydramnios 
Show

 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
Show

 HP:0002119 Ventriculomegaly 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002162 Low posterior hairline 
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 HP:0002208 Coarse hair 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002937 Hemivertebrae 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
Show

 HP:0100790 Hernia 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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