ENSG00000143614


Homo sapiens

Features
Gene ID: ENSG00000143614
  
Biological name :GATAD2B
  
Synonyms : GATAD2B / GATA zinc finger domain containing 2B / Q8WXI9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: q21.3
Gene start: 153789030
Gene end: 153923360
  
Corresponding Affymetrix probe sets: 225393_at (Human Genome U133 Plus 2.0 Array)   238076_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000357644
Ensembl peptide - ENSP00000490724
Ensembl peptide - ENSP00000490635
Ensembl peptide - ENSP00000489595
Ensembl peptide - ENSP00000489566
Ensembl peptide - ENSP00000489313
Ensembl peptide - ENSP00000489309
Ensembl peptide - ENSP00000489184
NCBI entrez gene - 57459     See in Manteia.
OMIM - 614998
RefSeq - NM_020699
RefSeq - XM_005245364
RefSeq Peptide - NP_065750
swissprot - A0A0U1RR34
swissprot - A0A1B0GW07
swissprot - Q8WXI9
swissprot - A0A0U1RR30
swissprot - A0A1B0GVS4
swissprot - A0A0U1RRM1
swissprot - A0A0U1RRK3
Ensembl - ENSG00000143614
  
Related genetic diseases (OMIM): 615074 - Mental retardation, autosomal dominant 18, 615074

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gatad2bENSDARG00000005834Danio rerio
 Q8VHR5ENSMUSG00000042390Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q86YP4 / GATAD2A / GATA zinc finger domain containing 2AENSG0000016749145


Protein motifs (from Interpro)
Interpro ID Name
 IPR000679  Zinc finger, GATA-type
 IPR013088  Zinc finger, NHR/GATA-type
 IPR032346  Transcriptional repressor p66, coiled-coil MBD2-interaction domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0043044 ATP-dependent chromatin remodeling HDA
 cellular_componentGO:0000790 nuclear chromatin HDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0032991 protein-containing complex HDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding HDA
 molecular_functionGO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding HDA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0031492 nucleosomal DNA binding HDA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
HDACs deacetylate histones
ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression
Regulation of TP53 Activity through Acetylation
RNA Polymerase I Transcription Initiation
Regulation of PTEN gene transcription


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
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 HP:0000219 Thin upper lip 
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 HP:0000316 Hypertelorism 
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 HP:0000322 Short philtrum 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000455 Broad nasal tip 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000490 Deep set eyes 
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 HP:0000540 Hypermetropia 
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000748 Inappropriate laughter 
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 HP:0000752 Hyperactivity 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0002463 Language impairment 
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 HP:0002465 Poor speech 
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 HP:0003593 Early onset 
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 HP:0008070 Sparse hair 
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 HP:0010511 Increased length of toes "The presence of abnormally long toes." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0100033 Tic disorders "A tic is a sudden, repetitive, nonrhythmic, stereotyped motor movement or vocalization involving discrete muscle groups." [HPO:sdoelken]
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 HP:0100807 Long fingers "The middle finger is more than 2 SD above the mean for newborns 27 to 41 weeks EGA or above the 97th centile for children from birth to 16 years of age AND the five digits retain their normal length proportions relative to each other (i.e., it is not the case that the middle finger is the only lengthened digit), or, Fingers that appear disproportionately long compared to the palm of the hand." [pmid:19125433]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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