ENSG00000143815


Homo sapiens

Features
Gene ID: ENSG00000143815
  
Biological name :LBR
  
Synonyms : lamin B receptor / LBR / Q14739
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: q42.12
Gene start: 225401502
Gene end: 225428925
  
Corresponding Affymetrix probe sets: 201795_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000272163
Ensembl peptide - ENSP00000416554
Ensembl peptide - ENSP00000388059
Ensembl peptide - ENSP00000339883
NCBI entrez gene - 3930     See in Manteia.
OMIM - 600024
RefSeq - XM_005273125
RefSeq - XM_011544185
RefSeq - NM_002296
RefSeq - NM_194442
RefSeq Peptide - NP_002287
RefSeq Peptide - NP_919424
swissprot - Q14739
swissprot - C9JXK0
swissprot - C9JES9
Ensembl - ENSG00000143815
  
Related genetic diseases (OMIM): 169400 - Pelger-Huet anomaly, 169400
  215140 - Greenberg skeletal dysplasia, 215140
  613471 - ?Reynolds syndrome, 613471
  618019 - Pelger-Huet anomaly with mild skeletal anomalies, 618019
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lbrENSDARG00000014013Danio rerio
 LBRENSGALG00000009305Gallus gallus
 LbrENSMUSG00000004880Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O76062 / TM7SF2 / transmembrane 7 superfamily member 2ENSG0000014980939
DHCR7 / Q9UBM7 / 7-dehydrocholesterol reductaseENSG0000017289325


Protein motifs (from Interpro)
Interpro ID Name
 IPR001171  Ergosterol biosynthesis ERG4/ERG24
 IPR002999  Tudor domain
 IPR018083  Sterol reductase, conserved site
 IPR019023  Lamin-B receptor of TUDOR domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006695 cholesterol biosynthetic process TAS
 biological_processGO:0016126 sterol biosynthetic process IBA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0005637 nuclear inner membrane IEA
 cellular_componentGO:0005639 integral component of nuclear inner membrane TAS
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0016021 integral component of membrane IDA
 cellular_componentGO:0031965 nuclear membrane IDA
 molecular_functionGO:0003677 DNA binding TAS
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005521 lamin binding TAS
 molecular_functionGO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IBA
 molecular_functionGO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEA
 molecular_functionGO:0050613 delta14-sterol reductase activity TAS
 molecular_functionGO:0070087 chromo shadow domain binding IPI


Pathways (from Reactome)
Pathway description
Cholesterol biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000164 Abnormality of the teeth "Any abnormality of the primary (deciduous) or permanent teeth." [HPO:curators]
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 HP:0000212 Gingival hyperplasia 
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 HP:0000214 Lip telangiectases 
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 HP:0000217 Xerostomia "Dryness of the mouth due to salivary gland dysfunction." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000403 Recurrent otitis media 
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 HP:0000476 Cystic hygroma of the neck "A cystic lymphatic lesion of the neck." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000692 Misalignment of teeth 
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 HP:0000773 Short ribs 
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 HP:0000774 Narrow chest 
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 HP:0000782 Abnormality of the scapulae "Any abnormality of the scapulae (shoulder blades)." [HPO:curators]
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 HP:0000878 11 pairs of ribs 
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 HP:0000890 Long clavicles 
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 HP:0000926 Platyspondyly 
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 HP:0000941 Short diaphyses 
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 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
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 HP:0000964 Eczema "Eczema is a form of dermatitis. The term eczema is broadly applied to a range of persistent skin conditions and can be related to a number of underlying conditions. Manifestations of eczema can include dryness and recurring skin rashes with redness, skin edema, itching and dryness, crusting, flaking, blistering, cracking, oozing, or bleeding." [HPO:curators]
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 HP:0000988 Skin rash 
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 HP:0000989 Pruritus "Pruritus is an itch or a sensation that makes a person want to scratch. This term refers to an abnormally increased disposition to experience pruritus." [HPO:curators]
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 HP:0001004 Lymphedema 
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 HP:0001097 Keratoconjunctivitis sicca "Dryness of the eye related to deficiency of the tear film components (aqueous, mucin, or lipid), lid surface abnormalities, or epithelial abnormalities. Keratoconjunctivitis sicca often results in a scratchy or sandy sensation (foreign body sensation) in the eyes, and may also be associated with itching, inability to produce tears, photosensitivity, redness, pain, and difficulty in moving the eyelids." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
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 HP:0001169 Broad hands 
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001362 Skull defect "A localized defect in the bone of the skull resulting from abnormal embryological development. The defect is covered by normal skin. In some cases, skull x-rays have shown underlying lytic bone lesions which have closed before the age of one year." [HPO:curators]
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 HP:0001367 Abnormality of the joints "An abnormality of the joints, i.e., of the articulations where two bones join." [HPO:curators]
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 HP:0001369 Arthritis 
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 HP:0001394 Cirrhosis 
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 HP:0001433 Hepatosplenomegaly 
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 HP:0001508 Failure to thrive 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001539 Omphalocele 
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 HP:0001541 Ascites 
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 HP:0001552 Barrel-shaped chest 
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 HP:0001561 Polyhydramnios 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001640 Cardiomegaly 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001761 Pes cavus 
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 HP:0001790 Nonimmune hydrops fetalis 
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 HP:0001802 Absent toenails 
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 HP:0001804 Hypoplastic fingernails "Underdeveloped fingernails." [HPO:curators]
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 HP:0001830 Postaxial polydactyly (feet) "Polydactyly of the foot most commonly refers to the presence of six toes on one foot. Postaxial polydactyly affects the lateral ray and the duplication may range from a well-formed articulated digit to a rudimentary digit." [HPO:curators]
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 HP:0001852 Gap between first and second toes "The presence of a larger than normal gap between the first and second toes related to medial displacement of the first toe." [HPO:curators]
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 HP:0001873 Thrombocytopenia 
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 HP:0001875 Neutropenia 
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 HP:0001881 Abnormality of leukocytes 
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 HP:0001902 Giant platelets 
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 HP:0001945 Fever 
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 HP:0001978 Extramedullary hematopoiesis 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
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 HP:0002089 Pulmonary hypoplasia 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002101 Abnormal lung lobation "Defects in the formation of pulmonary lobules." [HPO:curators]
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 HP:0002202 Pleural effusion "The presence of an excessive amount of fluid in the pleural cavity." [HPO:curators]
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 HP:0002239 Gastrointestinal hemorrhage 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002383 Encephalitis 
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 HP:0002395 Lower limb hyperreflexia 
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 HP:0002566 Intestinal malrotation "An abnormality of the intestinal rotation and fixation that normally occurs during the development of the gut. This can lead to volvulus, or twisting of the intestine that causes obstruction and necrosis." [HPO:curators]
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 HP:0002570 Steatorrhea 
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 HP:0002613 Biliary cirrhosis 
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 HP:0002694 Sclerotic skull base 
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 HP:0002787 Tracheal calcifications "Calcification (abnormal deposits of calcium) in the tracheal tissues." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0002904 Hyperbilirubinemia 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0002916 Abnormality of the chromosomes "A cytogenetically visible chromosomal abnormality." [HPO:curators]
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 HP:0002983 Micromelia 
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 HP:0003015 Metaphyseal flaring "The presence of splayed (i.e.,flared) metaphyseal segments of the long bones." [HPO:curators]
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 HP:0003021 Metaphyseal cupping "Metaphyseal cupping refers to an inward bulging of the metaphyseal profile giving the metaphysis a cup-like appearance." [HPO:curators]
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 HP:0003027 Mesomelia "Shortening of the middle parts of the limbs (forearm and lower leg) in relation to the upper and terminal segments." [HPO:sdoelken]
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 HP:0003107 Abnormality of cholesterol metabolism 
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 HP:0003155 Elevated alkaline phosphatase "Abnormally increased serum levels of `alkaline phosphatase activity` (GO:0004035)." [HPO:probinson]
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 HP:0003326 Myalgia "A tendency to experience muscle pain." [HPO:curators]
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 HP:0003440 Horizontal sacrum 
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 HP:0003502 Mild short stature "A mild degree of short stature." [HPO:curators]
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 HP:0003761 Calcinosis "Formation of calcium deposits in any soft tissue." [HPO:curators]
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 HP:0003811 Neonatal death 
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 HP:0003826 Stillborn or neonatal death 
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 HP:0004295 Abnormality of the gastric mucosa 
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 HP:0004331 Decreased skull ossification "A reduction in the magnitude or amount of ossification of the skull." [HPO:curators]
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 HP:0004510 Islets of Langerhans hyperplasia 
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 HP:0004598 platyspondyly with multiple extra ossification centers 
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 HP:0004599 Absent or minimally ossified vertebral bodies 
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 HP:0005019 Diaphyseal thickening 
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 HP:0005099 severe hydrops fetalis 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005528 Bone marrow hypoplasia 
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 HP:0005716 Lethal skeletal dysplasia 
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 HP:0005855 Multiple prenatal fractures "The presence of bone fractures in the prenatal period that are diagnosed at birth or before." [HPO:curators]
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 HP:0006487 Bowing of the long bones 
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 HP:0006559 Liver calcifications 
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 HP:0006619 Anterior rib punctate calcifications 
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 HP:0006637 Sternal punctate calcifications 
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 HP:0006895 Lower limb hypertonia 
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 HP:0007400 Irregular hyperpigmentation 
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 HP:0008364 Abnormality of the calcaneus 
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 HP:0008420 Vertebral calcifications 
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 HP:0008479 Hypoplastic vertebral bodies 
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 HP:0008516 Abnormality of the vertebral spinous processes 
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 HP:0008754 Laryngeal calcifications "Calcification (abnormal deposits of calcium) in the laryngeal tissues." [HPO:curators]
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 HP:0008873 Short stature, disproportionate short-limbed "A type of short stature characterized by a short limbs but an average-sized trunk." [HPO:curators]
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 HP:0008890 Severe short-limb dwarfism 
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 HP:0008905 Rhizomelic short stature 
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 HP:0009027 Foot dorsiflexor weakness 
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 HP:0009099 Median cleft palate "Cleft palate of the midline of the palate." [HPO:curators]
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 HP:0009106 Abnormal ossification involving the bones of the pelvis 
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 HP:0009107 Abnormal ossification involving the femoral head and neck 
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 HP:0009487 Ulnar deviation of the hand "A deviation of the orientation of the hand in the direction of the ulna (i.e., towards the little finger)." [HPO:curators]
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 HP:0009803 Hypoplastic/small phalanges of the hand 
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 HP:0009824 Hypoplasia involving bones of the upper limbs 
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 HP:0010041 Hypoplastic/short 3rd metacarpal 
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 HP:0010044 Hypoplastic/short 4th metacarpal 
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 HP:0010047 Hypoplastic/short 5th metacarpal 
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 HP:0010442 Polydactyly 
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 HP:0010655 Stippling of the epiphyses "The presence of abnormal punctate (speckled, dot-like) calcifications in the epiphyses (FMA:24012)." [HPO:curators]
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 HP:0010659 Patchy increased and decreased bone mineral density "Patchy (irregular) changes in bone mineral density which in this case include patches of bone showing an increased density side to side with pathches that are affected by reduction of mineral density. This can take on many forms depending on severity and distribution as can be seen on x-rays and sometimes is revered to as a moth-eaten appearance on x-rays." [HPO:curators]
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 HP:0010675 Abnormality of the mineralisation and ossification of bones of the feet 
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0011447 Hyposegmentation of neutrophil nuclei "Hyposegmented (hypolobulated) or bilobed neutrophil nuclei." [DDD:probinson]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0011838 Sclerodactyly "Localized thickening and tightness of the skin of the fingers or toes." [HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0025520 Calcinosis cutis "Deposition of calcium in the skin." []
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 HP:0030880 Raynaud phenomenon 
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 HP:0100324 Scleroderma "A chronic autoimmune disease characterized by fibrosis (or hardening), vascular alterations, and autoantibodies." [HPO:sdoelken]
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 HP:0100569 Abnormality of ossification/mineralisation of vertebrae 
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 HP:0100579 Mucosal telangiectasiae "`Telangiectasia` (HP:0001009) of the mucosa, the mucous membranes which are involved in absorption and secretion that line cavities that are exposed to the external environment and internal organs." [HPO:sdoelken]
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 HP:0100585 Teleangiectasia of the skin 
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 HP:0100602 Preecplampsia "Pregnancy-induced hypertension in association with significant amounts of protein in the urine." [HPO:sdoelken]
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 HP:0100725 Lichenification "Thickening and hardenining of the epidermis seen with exaggeration of normal skin lines." [HPO:probinson]
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 HP:0100869 Palmar telangiectasia "The presence of telangiectases on the `skin of palm of hand` (FMA:38301)." [HPO:probinson]
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000169057 MECP2 / P51608 / methyl-CpG binding protein 2  / complex / reaction






 

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