ENSG00000154743


Homo sapiens

Features
Gene ID: ENSG00000154743
  
Biological name :TSEN2
  
Synonyms : Q8NCE0 / tRNA splicing endonuclease subunit 2 / TSEN2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: p25.2
Gene start: 12484432
Gene end: 12539623
  
Corresponding Affymetrix probe sets: 219581_at (Human Genome U133 Plus 2.0 Array)   244391_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000408528
Ensembl peptide - ENSP00000407974
Ensembl peptide - ENSP00000408744
Ensembl peptide - ENSP00000416510
Ensembl peptide - ENSP00000284995
Ensembl peptide - ENSP00000385976
Ensembl peptide - ENSP00000392029
Ensembl peptide - ENSP00000406238
NCBI entrez gene - 80746     See in Manteia.
OMIM - 608753
RefSeq - XM_017007297
RefSeq - NM_001145393
RefSeq - NM_001145394
RefSeq - NM_001321277
RefSeq - NM_001321278
RefSeq - NM_001321279
RefSeq - NM_025265
RefSeq - XM_011534139
RefSeq - XM_017007292
RefSeq - XM_017007293
RefSeq - XM_017007294
RefSeq - XM_017007295
RefSeq - XM_017007296
RefSeq - NM_001145392
RefSeq Peptide - NP_001138865
RefSeq Peptide - NP_001308206
RefSeq Peptide - NP_001308207
RefSeq Peptide - NP_001308208
RefSeq Peptide - NP_079541
RefSeq Peptide - NP_001138864
RefSeq Peptide - NP_001138866
swissprot - H7C2Z3
swissprot - H7C301
swissprot - A0A024R2H2
swissprot - C9J7Z4
swissprot - Q8NCE0
Ensembl - ENSG00000154743
  
Related genetic diseases (OMIM): 612389 - Pontocerebellar hypoplasia type 2B, 612389
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tsen2ENSDARG00000091851Danio rerio
 TSEN2ENSGALG00000004981Gallus gallus
 Tsen2ENSMUSG00000042389Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006676  tRNA-splicing endonuclease
 IPR006677  tRNA intron endonuclease, catalytic domain-like
 IPR006678  tRNA intron endonuclease, N-terminal
 IPR016589  tRNA-splicing endonuclease, SEN2 subunit
 IPR036167  tRNA intron endonuclease, catalytic domain-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000379 tRNA-type intron splice site recognition and cleavage IBA
 biological_processGO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:0090501 RNA phosphodiester bond hydrolysis IEA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 cellular_componentGO:0000214 tRNA-intron endonuclease complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005829 cytosol IDA
 molecular_functionGO:0000213 tRNA-intron endonuclease activity IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004519 endonuclease activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016829 lyase activity IEA


Pathways (from Reactome)
Pathway description
tRNA processing in the nucleus


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0002059 Cerebral atrophy 
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 HP:0002072 Chorea "Chorea (Greek for dance ) refers to widespread arrhythmic involuntary movements of a forcible, jerky and restless fashion." [HPO:curators]
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002169 Clonus 
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 HP:0002179 Opisthotonus 
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 HP:0002365 Hypoplasia of the brainstem 
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 HP:0002509 Limb hypertonia 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0007308 Extrapyramidal dyskinesia 
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0009879 Cortical gyral simplification "An abnormal reduction of the number and complexity of the pattern of gyrations of the cerebral cortex." [HPO:curators]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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