ENSMUSG00000042389


Mus musculus

Features
Gene ID: ENSMUSG00000042389
  
Biological name :Tsen2
  
Synonyms : Q6P7W5 / tRNA-splicing endonuclease subunit Sen2 / Tsen2
  
Possible biological names infered from orthology : Q8NCE0 / tRNA splicing endonuclease subunit 2
  
Species: Mus musculus
  
Chr. number: 6
Strand: 1
Band: E3
Gene start: 115544664
Gene end: 115578628
  
Corresponding Affymetrix probe sets: 10540911 (MoGene1.0st)   1435118_at (Mouse Genome 430 2.0 Array)   1459346_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000145431
Ensembl peptide - ENSMUSP00000038211
NCBI entrez gene - 381802     See in Manteia.
MGI - MGI:2141599
RefSeq - NM_199033
RefSeq - XM_006506336
RefSeq Peptide - NP_950198
swissprot - A0A0N4SW98
swissprot - Q6P7W5
Ensembl - ENSMUSG00000042389
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tsen2ENSDARG00000091851Danio rerio
 TSEN2ENSGALG00000004981Gallus gallus
 TSEN2ENSG00000154743Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006676  tRNA-splicing endonuclease
 IPR006677  tRNA intron endonuclease, catalytic domain-like
 IPR006678  tRNA intron endonuclease, N-terminal
 IPR016589  tRNA-splicing endonuclease, SEN2 subunit
 IPR036167  tRNA intron endonuclease, catalytic domain-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000379 tRNA-type intron splice site recognition and cleavage IBA
 biological_processGO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation ISO
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:0090501 RNA phosphodiester bond hydrolysis IEA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 cellular_componentGO:0000214 tRNA-intron endonuclease complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0000213 tRNA-intron endonuclease activity IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0016829 lyase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr