ENSGALG00000004981


Gallus gallus

Features
Gene ID: ENSGALG00000004981
  
Biological name :TSEN2
  
Synonyms : tRNA-splicing endonuclease subunit Sen2 / TSEN2
  
Possible biological names infered from orthology : Q6P7W5 / Q8NCE0 / tRNA splicing endonuclease subunit 2
  
Species: Gallus gallus
  
Chr. number: 12
Strand: 1
Band:
Gene start: 4917655
Gene end: 4927803
  
Corresponding Affymetrix probe sets: GgaAffx.12855.1.S1_s_at (Chicken Array)   GgaAffx.3105.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000056724
Ensembl peptide - ENSGALP00000007969
NCBI entrez gene - 415965     See in Manteia.
RefSeq - XM_015293063
RefSeq - NM_001030594
RefSeq - XM_015293061
RefSeq - XM_015293062
RefSeq Peptide - NP_001025765
swissprot - F1NIA3
swissprot - A0A1D5PUW6
Ensembl - ENSGALG00000004981
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tsen2ENSDARG00000091851Danio rerio
 TSEN2ENSG00000154743Homo sapiens
 Tsen2ENSMUSG00000042389Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006676  tRNA-splicing endonuclease
 IPR006677  tRNA intron endonuclease, catalytic domain-like
 IPR006678  tRNA intron endonuclease, N-terminal
 IPR011856  tRNA endonuclease-like domain superfamily
 IPR016589  tRNA-splicing endonuclease, SEN2 subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:0090501 RNA phosphodiester bond hydrolysis IEA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 cellular_componentGO:0000214 tRNA-intron endonuclease complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0000213 tRNA-intron endonuclease activity IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0016829 lyase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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