ENSG00000160695


Homo sapiens

Features
Gene ID: ENSG00000160695
  
Biological name :VPS11
  
Synonyms : Q9H270 / VPS11 / VPS11, CORVET/HOPS core subunit
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: 1
Band: q23.3
Gene start: 119067692
Gene end: 119081978
  
Corresponding Affymetrix probe sets: 203292_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000479680
Ensembl peptide - ENSP00000485025
Ensembl peptide - ENSP00000481807
Ensembl peptide - ENSP00000481126
NCBI entrez gene - 55823     See in Manteia.
OMIM - 608549
RefSeq - XM_011542899
RefSeq - NM_001290185
RefSeq - NM_021729
RefSeq - XM_011542898
RefSeq Peptide - NP_001277114
RefSeq Peptide - NP_068375
swissprot - B7Z879
swissprot - A0A087WXL6
swissprot - A0A087X2J4
swissprot - Q9H270
Ensembl - ENSG00000160695
  
Related genetic diseases (OMIM): 616683 - Leukodystrophy, hypomyelinating, 12, 616683
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps11ENSDARG00000036338Danio rerio
 VPS11ENSGALG00000029536Gallus gallus
 Vps11ENSMUSG00000032127Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000547  Clathrin, heavy chain/VPS, 7-fold repeat
 IPR001841  Zinc finger, RING-type
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016024  Armadillo-type fold
 IPR016528  Vacuolar protein sorting-associated protein 11
 IPR024763  Vacuolar protein sorting protein 11, C-terminal
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006904 vesicle docking involved in exocytosis IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0007032 endosome organization IBA
 biological_processGO:0007040 lysosome organization IBA
 biological_processGO:0008333 endosome to lysosome transport IMP
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0031647 regulation of protein stability IMP
 biological_processGO:0034058 endosomal vesicle fusion IMP
 biological_processGO:0035542 regulation of SNARE complex assembly IBA
 biological_processGO:1901998 toxin transport IEA
 biological_processGO:1902115 regulation of organelle assembly IMP
 biological_processGO:1903364 positive regulation of cellular protein catabolic process IMP
 biological_processGO:1903955 positive regulation of protein targeting to mitochondrion IMP
 biological_processGO:2000643 positive regulation of early endosome to late endosome transport IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005770 late endosome IDA
 cellular_componentGO:0005776 autophagosome IEA
 cellular_componentGO:0005884 actin filament IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030123 AP-3 adaptor complex IEA
 cellular_componentGO:0030136 clathrin-coated vesicle IEA
 cellular_componentGO:0030139 endocytic vesicle IDA
 cellular_componentGO:0030897 HOPS complex IDA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0031902 late endosome membrane IEA
 cellular_componentGO:0033263 CORVET complex IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019904 protein domain specific binding IPI
 molecular_functionGO:0019905 syntaxin binding IDA
 molecular_functionGO:0030674 protein binding, bridging IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000011 Neurogenic bladder 
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000365 Hearing loss 
Show

 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
Show

 HP:0000648 Optic atrophy 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001272 Cerebellar atrophy 
Show

 HP:0001344 Absent speech development 
Show

 HP:0001371 Contractures 
Show

 HP:0001510 Growth retardation 
Show

 HP:0002019 Constipation 
Show

 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
Show

 HP:0002119 Ventriculomegaly 
Show

 HP:0002188 Delayed myelination 
Show

 HP:0002373 Febrile seizures "Febrile seizures are convulsions induced by a fever in infants or small children and are generally characterized by loss of consciousness and tonic-clonic movements. Most febrile seizures last a minute or two." [HPO:curators]
Show

 HP:0002384 Complex partial seizures "A `partial seizure` (HP:0007359) characterized by impairment or loss of consciousness." [HPO:curators]
Show

 HP:0002459 Dysautonomia 
Show

 HP:0002465 Poor speech 
Show

 HP:0002518 Periventricular white matter changes 
Show

 HP:0002828 Multiple joint contractures 
Show

 HP:0005484 Microcephaly, postnatal 
Show

 HP:0005968 Temperature instability "Disordered thermoregulation characterized by an impaired ability to maintain a balance between heat production and heat loss, with resulting instability of body temperature." [HPO:curators]
Show

 HP:0006808 Hypomyelination of the brain 
Show

 HP:0007204 Brain imaging shows diffuse white matter abnormalities 
Show

 HP:0007281 Developmental arrest 
Show

 HP:0007301 Oromotor apraxia 
Show

 HP:0007663 Decreased central vision 
Show

 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
Show

 HP:0011344 Severe global developmental delay "A severe delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
Show

 HP:0011398 Central hypotonia "Reduced muscle tone secondary to an abnormality of the central nervous system." [DDD:fmuntoni]
Show

 HP:0012448 Delayed myelination "`Delayed` (PATO:0000502) `myelination` (GO:0042552)." [ORCID:0000-0001-5208-3432]
Show

 HP:0100704 Cortical visual impairment "A form of loss of vision caused by damage to the visual cortex rather than a defect in the eye." [HPO:probinson]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr