ENSG00000161217


Homo sapiens

Features
Gene ID: ENSG00000161217
  
Biological name :PCYT1A
  
Synonyms : P49585 / PCYT1A / phosphate cytidylyltransferase 1, choline, alpha
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: q29
Gene start: 196214222
Gene end: 196287957
  
Corresponding Affymetrix probe sets: 204209_at (Human Genome U133 Plus 2.0 Array)   204210_s_at (Human Genome U133 Plus 2.0 Array)   225069_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000392397
Ensembl peptide - ENSP00000393341
Ensembl peptide - ENSP00000402283
Ensembl peptide - ENSP00000402015
Ensembl peptide - ENSP00000400430
Ensembl peptide - ENSP00000397888
Ensembl peptide - ENSP00000394617
Ensembl peptide - ENSP00000292823
Ensembl peptide - ENSP00000390458
Ensembl peptide - ENSP00000390968
Ensembl peptide - ENSP00000391405
NCBI entrez gene - 5130     See in Manteia.
OMIM - 123695
RefSeq - NM_005017
RefSeq - NM_001312673
RefSeq Peptide - NP_001299602
RefSeq Peptide - NP_005008
swissprot - C9J050
swissprot - F8WAZ5
swissprot - F8WBU2
swissprot - H7BZN1
swissprot - H7C1T3
swissprot - C9JVS0
swissprot - P49585
swissprot - C9JPY0
swissprot - C9JEJ2
swissprot - C9J2E1
Ensembl - ENSG00000161217
  
Related genetic diseases (OMIM): 608940 - Spondylometaphyseal dysplasia with cone-rod dystrophy, 608940
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcyt1aaENSDARG00000011233Danio rerio
 pcyt1abENSDARG00000004492Danio rerio
 PCYT1AENSGALG00000007474Gallus gallus
 P49586ENSMUSG00000005615Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PCYT1B / Q9Y5K3 / phosphate cytidylyltransferase 1, choline, betaENSG0000010223068


Protein motifs (from Interpro)
Interpro ID Name
 IPR004821  Cytidyltransferase-like domain
 IPR014729  Rossmann-like alpha/beta/alpha sandwich fold
 IPR036437  Outer surface protein C-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006656 phosphatidylcholine biosynthetic process TAS
 biological_processGO:0006657 CDP-choline pathway ISS
 biological_processGO:0008654 phospholipid biosynthetic process IEA
 biological_processGO:0009058 biosynthetic process IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0009279 cell outer membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0042587 glycogen granule ISS
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004105 choline-phosphate cytidylyltransferase activity TAS
 molecular_functionGO:0005516 calmodulin binding IEA
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA
 molecular_functionGO:0031210 phosphatidylcholine binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA


Pathways (from Reactome)
Pathway description
Synthesis of PC


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000403 Recurrent otitis media 
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 HP:0000483 Astigmatism 
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000529 Progressive visual loss 
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 HP:0000545 Myopia 
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 HP:0000548 Cone-rod dystrophy 
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 HP:0000551 Abnormal color vision 
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000572 Visual loss 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000662 Night blindness 
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 HP:0000689 Dental malocclusion "Dental malocclusion refers to an abnormality of the occlusion, or alignment, of the teeth and the way the upper and lower teeth fit together, resulting in overcrowding of teeth or in abnormal bite patterns." [HPO:curators]
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 HP:0000772 Abnormality of the ribs 
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 HP:0000887 Cupped ribs 
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 HP:0000926 Platyspondyly 
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 HP:0001129 Large central visual field defect 
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 HP:0001141 Severe visual impairment 
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 HP:0001156 Brachydactyly 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0002084 Encephalocele 
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 HP:0002269 Neuronal migration disorder 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002657 Spondylometaphyseal dysplasia 
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 HP:0002812 Coxa vara 
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 HP:0002980 Femoral bowing "Bowing (abnormal curvature) of the femur." [HPO:curators]
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 HP:0002982 Tibial bowing "A developmental defect with posteromedial tibial angulation." [HPO:curators]
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 HP:0002996 Limited elbow movement 
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 HP:0003016 Metaphyseal widening "Abnormal widening of the metaphyseal regions of long bones." [HPO:curators]
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 HP:0003021 Metaphyseal cupping "Metaphyseal cupping refers to an inward bulging of the metaphyseal profile giving the metaphysis a cup-like appearance." [HPO:curators]
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 HP:0003025 Irregular metaphyses 
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 HP:0003184 Decreased hip abduction 
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 HP:0003300 Ovoid vertebral bodies 
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 HP:0003307 Hyperlordosis 
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 HP:0003375 Narrow greater sacrosciatic notches "A narrowing of the sacrosciatic notch, i.e., the deep indentation in the posterior border of the hip bone at the point of union of the ilium and ischium." [HPO:curators]
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 HP:0003510 Short stature, severe "A severe degree of short stature." [HPO:curators]
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 HP:0004279 Hypoplastic hand 
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0004565 severe platyspondyly 
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 HP:0006487 Bowing of the long bones 
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 HP:0006817 Cerebellar vermis aplasia/hypoplasia "Absence or underdevelopment of the cerebellar vermis." [HPO:curators]
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007730 Reduced iris pigmentation 
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 HP:0007994 Peripheral visual field loss 
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 HP:0008002 Macular pigmentary changes 
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 HP:0008499 High-grade hypermetropia 
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 HP:0008821 Hypoplastic inferior ilia 
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 HP:0008897 Growth retardation, progressive 
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 HP:0008905 Rhizomelic short stature 
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 HP:0009381 Hypoplastic/small fingers 
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 HP:0010049 Hypoplastic/short metacarpal bones 
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 HP:0012795 Abnormality of the optic disc "A morphological abnormality of the optic disc, i.e., of the portion of the optic nerve clinically visible on fundoscopic examination." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000161217 P49585 / PCYT1A / phosphate cytidylyltransferase 1, choline, alpha  / complex






 

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