ENSG00000161813


Homo sapiens

Features
Gene ID: ENSG00000161813
  
Biological name :LARP4
  
Synonyms : La ribonucleoprotein domain family member 4 / LARP4 / Q71RC2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q13.12
Gene start: 50392383
Gene end: 50480004
  
Corresponding Affymetrix probe sets: 1555384_a_at (Human Genome U133 Plus 2.0 Array)   212714_at (Human Genome U133 Plus 2.0 Array)   214155_s_at (Human Genome U133 Plus 2.0 Array)   238959_at (Human Genome U133 Plus 2.0 Array)   238960_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000448756
Ensembl peptide - ENSP00000449090
Ensembl peptide - ENSP00000482977
Ensembl peptide - ENSP00000477974
Ensembl peptide - ENSP00000293618
Ensembl peptide - ENSP00000340901
Ensembl peptide - ENSP00000381490
Ensembl peptide - ENSP00000415464
Ensembl peptide - ENSP00000428516
Ensembl peptide - ENSP00000429077
Ensembl peptide - ENSP00000429631
Ensembl peptide - ENSP00000429781
Ensembl peptide - ENSP00000430551
Ensembl peptide - ENSP00000430851
Ensembl peptide - ENSP00000446540
Ensembl peptide - ENSP00000446966
Ensembl peptide - ENSP00000447397
Ensembl peptide - ENSP00000447408
Ensembl peptide - ENSP00000448180
NCBI entrez gene - 113251     See in Manteia.
RefSeq - XM_017018762
RefSeq - NM_001352318
RefSeq - NM_052879
RefSeq - NM_199188
RefSeq - NM_199190
RefSeq - XM_005268613
RefSeq - XM_011537828
RefSeq - XM_011537829
RefSeq - XM_011537830
RefSeq - XM_011537831
RefSeq - XM_011537833
RefSeq - XM_011537834
RefSeq - XM_011537835
RefSeq - XM_011537836
RefSeq - XM_011537838
RefSeq - XM_011537839
RefSeq - XM_011537840
RefSeq - XM_011537841
RefSeq - XM_011537843
RefSeq - XM_011537844
RefSeq - XM_017018750
RefSeq - XM_017018751
RefSeq - XM_017018752
RefSeq - XM_017018753
RefSeq - XM_017018754
RefSeq - XM_017018755
RefSeq - XM_017018756
RefSeq - XM_017018757
RefSeq - XM_017018758
RefSeq - XM_017018759
RefSeq - XM_017018760
RefSeq - XM_017018761
RefSeq - NM_001170803
RefSeq - NM_001170804
RefSeq - NM_001170808
RefSeq - NM_001330415
RefSeq - NM_001352304
RefSeq - NM_001352305
RefSeq - NM_001352309
RefSeq - NM_001352310
RefSeq - NM_001352311
RefSeq - NM_001352312
RefSeq - NM_001352313
RefSeq - NM_001352314
RefSeq Peptide - NP_001339234
RefSeq Peptide - NP_001339240
RefSeq Peptide - NP_001339241
RefSeq Peptide - NP_001339242
RefSeq Peptide - NP_001339243
RefSeq Peptide - NP_001339247
RefSeq Peptide - NP_001339253
RefSeq Peptide - NP_443111
RefSeq Peptide - NP_954658
RefSeq Peptide - NP_954660
RefSeq Peptide - NP_001164274
RefSeq Peptide - NP_001164275
RefSeq Peptide - NP_001164279
RefSeq Peptide - NP_001317344
RefSeq Peptide - NP_001339233
RefSeq Peptide - NP_001339238
RefSeq Peptide - NP_001339239
swissprot - E5RHZ8
swissprot - F8VNV1
swissprot - F8VSA9
swissprot - F8VXL0
swissprot - F8VY40
swissprot - F8VZ60
swissprot - F8W1I4
swissprot - F8W1Z5
swissprot - Q8TBL5
swissprot - Q96J85
swissprot - X6RLN4
swissprot - A0A087WTL9
swissprot - E5RJH8
swissprot - Q71RC2
Ensembl - ENSG00000161813
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 larp4aaENSDARG00000078401Danio rerio
 larp4abENSDARG00000074979Danio rerio
 LARP4ENSGALG00000042122Gallus gallus
 Larp4ENSMUSG00000023025Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LARP4B / Q92615 / La ribonucleoprotein domain family member 4BENSG0000010792934


Protein motifs (from Interpro)
Interpro ID Name
 IPR006630  La-type HTH domain
 IPR034903  LARP4, RNA recognition motif
 IPR035979  RNA-binding domain superfamily
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0007010 cytoskeleton organization IMP
 biological_processGO:0022604 regulation of cell morphogenesis IMP
 biological_processGO:0045727 positive regulation of translation IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005844 polysome IDA
 cellular_componentGO:0010494 cytoplasmic stress granule IEA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008143 poly(A) binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr