ENSG00000162688


Homo sapiens

Features
Gene ID: ENSG00000162688
  
Biological name :AGL
  
Synonyms : AGL / amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase / P35573
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p21.2
Gene start: 99850084
Gene end: 99924023
  
Corresponding Affymetrix probe sets: 203566_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000359180
Ensembl peptide - ENSP00000355106
Ensembl peptide - ENSP00000359182
Ensembl peptide - ENSP00000359184
Ensembl peptide - ENSP00000294724
Ensembl peptide - ENSP00000354971
NCBI entrez gene - 178     See in Manteia.
OMIM - 610860
RefSeq - XM_017000501
RefSeq - NM_000028
RefSeq - NM_000642
RefSeq - NM_000643
RefSeq - NM_000644
RefSeq - NM_000645
RefSeq - NM_000646
RefSeq - XM_005270557
RefSeq Peptide - NP_000019
RefSeq Peptide - NP_000634
RefSeq Peptide - NP_000635
RefSeq Peptide - NP_000637
RefSeq Peptide - NP_000633
swissprot - A0A1C7CYW1
swissprot - P35573
swissprot - A0A0S2A4E4
Ensembl - ENSG00000162688
  
Related genetic diseases (OMIM): 232400 - Glycogen storage disease IIIa, 232400
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 aglaENSDARG00000103811Danio rerio
 aglbENSDARG00000100352Danio rerio
 LO018627.1ENSDARG00000106630Danio rerio
 AGLENSGALG00000005407Gallus gallus
 AglENSMUSG00000033400Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006421  Glycogen debranching enzyme, metazoa
 IPR008928  Six-hairpin glycosidase superfamily
 IPR010401  Glycogen debranching enzyme
 IPR017853  Glycoside hydrolase superfamily
 IPR029436  Eukaryotic glycogen debranching enzyme, N-terminal domain
 IPR032788  Glycogen debranching enzyme, central domain
 IPR032790  Glycogen debranching enzyme, C-terminal
 IPR032792  Glycogen debranching enzyme, glucanotransferase domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0005977 glycogen metabolic process IEA
 biological_processGO:0005978 glycogen biosynthetic process IEA
 biological_processGO:0005980 glycogen catabolic process IBA
 biological_processGO:0007584 response to nutrient IEA
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0009725 response to hormone IEA
 biological_processGO:0043312 neutrophil degranulation TAS
 biological_processGO:0051384 response to glucocorticoid IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016234 inclusion body IEA
 cellular_componentGO:0016529 sarcoplasmic reticulum IEA
 cellular_componentGO:0034774 secretory granule lumen TAS
 cellular_componentGO:0043033 isoamylase complex TAS
 cellular_componentGO:1904813 ficolin-1-rich granule lumen TAS
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004133 glycogen debranching enzyme activity TAS
 molecular_functionGO:0004134 4-alpha-glucanotransferase activity EXP
 molecular_functionGO:0004135 amylo-alpha-1,6-glucosidase activity EXP
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016798 hydrolase activity, acting on glycosyl bonds IEA
 molecular_functionGO:0030246 carbohydrate binding IEA
 molecular_functionGO:0030247 polysaccharide binding IEA
 molecular_functionGO:0031593 polyubiquitin modification-dependent protein binding IEA
 molecular_functionGO:0102500 beta-maltose 4-alpha-glucanotransferase activity IEA


Pathways (from Reactome)
Pathway description
Neutrophil degranulation
Glycogen breakdown (glycogenolysis)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000219 Thin upper lip 
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 HP:0000233 Thin vermillion border 
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000293 Full cheeks 
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 HP:0000455 Broad nasal tip 
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 HP:0000490 Deep set eyes 
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001395 Hepatic fibrosis 
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 HP:0001638 Cardiomyopathy 
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 HP:0001714 Ventricular hypertrophy 
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 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
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 HP:0002155 Hypertriglyceridemia 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002721 Immunodeficiency 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003077 Hyperlipidemia 
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 HP:0003198 Myopathy 
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000163754 GYG1 / P46976 / glycogenin 1  / reaction
 ENSG00000056998 GYG2 / O15488 / glycogenin 2  / reaction






 

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