ENSG00000163754


Homo sapiens

Features
Gene ID: ENSG00000163754
  
Biological name :GYG1
  
Synonyms : glycogenin 1 / GYG1 / P46976
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: q24
Gene start: 148991341
Gene end: 149027668
  
Corresponding Affymetrix probe sets: 201554_x_at (Human Genome U133 Plus 2.0 Array)   211275_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000418297
Ensembl peptide - ENSP00000486061
Ensembl peptide - ENSP00000420683
Ensembl peptide - ENSP00000420247
Ensembl peptide - ENSP00000419499
Ensembl peptide - ENSP00000296048
Ensembl peptide - ENSP00000340736
Ensembl peptide - ENSP00000417671
NCBI entrez gene - 2992     See in Manteia.
OMIM - 603942
RefSeq - XM_017006275
RefSeq - NM_001184720
RefSeq - NM_001184721
RefSeq - NM_004130
RefSeq Peptide - NP_004121
RefSeq Peptide - NP_001171649
RefSeq Peptide - NP_001171650
swissprot - C9J8R8
swissprot - G5E9W8
swissprot - C9J7C7
swissprot - P46976
swissprot - C9JQ42
Ensembl - ENSG00000163754
  
Related genetic diseases (OMIM): 613507 - ?Glycogen storage disease XV, 613507
  616199 - Polyglucosan body myopathy 2, 616199
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gyg1aENSDARG00000011934Danio rerio
 gyg1bENSDARG00000059391Danio rerio
 GYG1ENSGALG00000035535Gallus gallus
 GygENSMUSG00000019528Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GYG2 / O15488 / glycogenin 2ENSG0000005699853


Protein motifs (from Interpro)
Interpro ID Name
 IPR002495  Glycosyl transferase, family 8
 IPR029044  Nucleotide-diphospho-sugar transferases


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0005978 glycogen biosynthetic process TAS
 biological_processGO:0005980 glycogen catabolic process TAS
 biological_processGO:0043312 neutrophil degranulation TAS
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0034774 secretory granule lumen TAS
 cellular_componentGO:0043202 lysosomal lumen TAS
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:1904813 ficolin-1-rich granule lumen TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008466 glycogenin glucosyltransferase activity EXP
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0102751 UDP-alpha-D-glucose:glucosyl-glycogenin alpha-D-glucosyltransferase activity IEA


Pathways (from Reactome)
Pathway description
Glycogen synthesis
Myoclonic epilepsy of Lafora
Glycogen storage disease type XV (GYG1)
Glycogen storage disease type 0 (muscle GYS1)
Glycogen storage disease type II (GAA)
Neutrophil degranulation
Glycogen breakdown (glycogenolysis)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001638 Cardiomyopathy 
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 HP:0001663 Ventricular fibrillation 
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 HP:0001714 Ventricular hypertrophy 
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 HP:0001962 Palpitations 
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 HP:0002321 Vertigo "An abnormal sensation of spinning while the body is actually stationary." [HPO:curators]
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0002875 Exertional dyspnea 
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 HP:0003199 Decreased muscle mass 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003325 Limb-girdle muscle weakness "Weakness of the limb-girdle muscles (also known as the pelvic and shoulder girdles), that is, lack of strength of the muscles around the shoulders and the pelvis." [HPO:curators]
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 HP:0003458 EMG myopathic abnormalities "The presence of abnormal electromyographic patterns indicative of myopathy, such as small-short polyphasic motor unit potentials." [HPO:curators]
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 HP:0003484 Upper limb involvement may occur later 
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 HP:0003547 Shoulder girdle muscle weakness "The shoulder, or pectoral, girdle is composed of the clavicles and the scapulae. Shoulder-girdle weakness refers to lack of strength of the muscles attaching to these bones, that is, lack of strength of the muscles around the shoulders." [HPO:curators]
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 HP:0003677 Slow progression 
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 HP:0003722 Neck flexor weakness "Weakness of the muscles involved in neck flexion (sternocleidomastoid, longus capitus, longus colli, and scalenus anterior)." [HPO:curators]
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 HP:0003828 Variable expressivity 
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 HP:0004308 Ventricular arrhythmia 
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 HP:0004756 Ventricular tachycardia 
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 HP:0005144 Left ventricular septal hypertrophy 
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 HP:0009023 Abdominal wall muscle weakness 
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 HP:0009027 Foot dorsiflexor weakness 
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 HP:0010872 EKG: T-wave inversion "An inversion of the T-wave (which is normally positive)." [HPO:probinson]
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 HP:0011712 Right bundle branch block "A conduction block of the right branch of the bundle of His. This manifests as a prolongation of the QRS complex (greater than 0.12 s) with delayed activation of the right ventricle and terminal delay on the EKG." [DDD:dbrown, HPO:probinson]
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 HP:0012251 ST segment elevation "An electrocardiographic anomaly in which the ST segment is observed to be located superior to the isoelectric line." [HPO:probinson]
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 HP:0012270 Decreased muscle glycogen content "A decreased amount of glycogen in muscle tissue." [HPO:probinson]
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 HP:0031319 Cardiomyocyte hypertrophy "An abnormal increase in the volume of cardiac myocytes." [PMID:7626345]
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 HP:0040014 Increased mitochondrial number 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000068976 PYGM / P11217 / glycogen phosphorylase, muscle associated  / reaction
 ENSG00000104812 GYS1 / P13807 / glycogen synthase 1  / complex
 ENSG00000162688 AGL / P35573 / amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase  / reaction
 ENSG00000171298 GAA / P10253 / glucosidase alpha, acid  / reaction
 ENSG00000163754 GYG1 / P46976 / glycogenin 1  / complex
 ENSG00000119938 Q9UQK1 / PPP1R3C / protein phosphatase 1 regulatory subunit 3C  / complex / reaction
 ENSG00000112425 EPM2A / O95278 / EPM2A, laforin glucan phosphatase  / reaction
 ENSG00000114480 GBE1 / Q04446 / 1,4-alpha-glucan branching enzyme 1  / reaction






 

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