ENSG00000112425


Homo sapiens

Features
Gene ID: ENSG00000112425
  
Biological name :EPM2A
  
Synonyms : EPM2A / EPM2A, laforin glucan phosphatase / O95278
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: -1
Band: q24.3
Gene start: 145382535
Gene end: 145736023
  
Corresponding Affymetrix probe sets: 205231_s_at (Human Genome U133 Plus 2.0 Array)   210870_s_at (Human Genome U133 Plus 2.0 Array)   216079_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000491330
Ensembl peptide - ENSP00000491338
Ensembl peptide - ENSP00000492876
Ensembl peptide - ENSP00000492823
Ensembl peptide - ENSP00000492701
Ensembl peptide - ENSP00000492179
Ensembl peptide - ENSP00000491590
Ensembl peptide - ENSP00000491353
Ensembl peptide - ENSP00000356489
Ensembl peptide - ENSP00000405913
Ensembl peptide - ENSP00000414900
Ensembl peptide - ENSP00000480268
Ensembl peptide - ENSP00000480339
Ensembl peptide - ENSP00000491180
Ensembl peptide - ENSP00000491191
Ensembl peptide - ENSP00000491224
Ensembl peptide - ENSP00000491251
NCBI entrez gene - 7957     See in Manteia.
OMIM - 607566
RefSeq - XM_017011302
RefSeq - NM_001018041
RefSeq - NM_005670
RefSeq - XM_006715564
RefSeq - XM_011536116
RefSeq - XM_017011300
RefSeq - XM_017011301
RefSeq Peptide - NP_001018051
RefSeq Peptide - NP_005661
swissprot - O95278
swissprot - A0A1W2PRS5
swissprot - A0A1W2PRC9
swissprot - A0A1W2PQ84
swissprot - A0A1W2PPT8
swissprot - A0A1W2PPJ6
swissprot - A0A1W2PP62
swissprot - H0Y6I8
swissprot - H0UI04
swissprot - H0Y7S8
Ensembl - ENSG00000112425
  
Related genetic diseases (OMIM): 254780 - Epilepsy, progressive myoclonic 2A (Lafora), 254780
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 epm2aENSDARG00000059044Danio rerio
 EPM2AENSGALG00000012275Gallus gallus
 Epm2aENSMUSG00000055493Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000340  Dual specificity phosphatase, catalytic domain
 IPR000387  Tyrosine specific protein phosphatases domain
 IPR002044  Carbohydrate binding module family 20
 IPR013783  Immunoglobulin-like fold
 IPR013784  Carbohydrate-binding-like fold
 IPR016130  Protein-tyrosine phosphatase, active site
 IPR020422  Dual specificity protein phosphatase domain
 IPR024950  Dual specificity phosphatase
 IPR029021  Protein-tyrosine phosphatase-like
 IPR034831  Laforin, CBM20 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0005975 carbohydrate metabolic process IEA
 biological_processGO:0005977 glycogen metabolic process NAS
 biological_processGO:0005978 glycogen biosynthetic process TAS
 biological_processGO:0006470 protein dephosphorylation IDA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0016239 positive regulation of macroautophagy IEA
 biological_processGO:0016311 dephosphorylation IEA
 biological_processGO:0035335 peptidyl-tyrosine dephosphorylation IMP
 biological_processGO:0046838 phosphorylated carbohydrate dephosphorylation IDA
 biological_processGO:0046959 habituation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005844 polysome IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane IDA
 molecular_functionGO:0004721 phosphoprotein phosphatase activity IEA
 molecular_functionGO:0004722 protein serine/threonine phosphatase activity IDA
 molecular_functionGO:0004725 protein tyrosine phosphatase activity IMP
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008138 protein tyrosine/serine/threonine phosphatase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016791 phosphatase activity IEA
 molecular_functionGO:0019203 carbohydrate phosphatase activity IDA
 molecular_functionGO:0030246 carbohydrate binding IDA
 molecular_functionGO:0042803 protein homodimerization activity IPI
 molecular_functionGO:2001069 glycogen binding IDA
 molecular_functionGO:2001070 starch binding IEA


Pathways (from Reactome)
Pathway description
Glycogen synthesis
Myoclonic epilepsy of Lafora


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000572 Visual loss 
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000726 Dementia 
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001399 Hepatic failure 
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 HP:0001425 Heterogeneous 
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 HP:0001939 Metabolism abnormality 
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 HP:0002121 Absence seizures "Recurrent absence seizures are `generalized seizures` (HP:0002197) that are characterized by a sudden cessation of motor activity and by a blank facial expression with flickering of the eyelids. There is no convulsive muscular activity or loss of postural control." [HPO:probinson]
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 HP:0002123 Myoclonic seizures "Myoclonic seizures are sudden, brief losses of consciousness and postural tone not associated with tonic muscular contractions. Myoclonic seizures may involve one body part or the entire body. In the latter case, the myoclonic seizure is accompanied by a violent fall but not by loss of consciousness." [HPO:curators]
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 HP:0002186 Apraxia "A defect in the understanding of complex motor commands and in the execution of certain learned movements, i.e., deficits in the cognitive components of learned movements." [HPO:curators]
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 HP:0002344 Progressive neurologic deterioration 
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 HP:0002367 Visual hallucinations 
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 HP:0003678 Rapidly progressive 
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 HP:0007334 Partial seizures with secondary generalization "`Partial seizures` (HP:0007359) with secondary evolution into a `generalized seizures` (HP:0002197)." [HPO:probinson]
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 HP:0011165 Visual auras "Auras with sensation of flashing or flickering lights, spots, simple patterns, scotomata, or amaurosis." [HPO:jalbers]
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 HP:0025121 Simple partial occipital seizures "A type of focal seizure (i.e., affecting initially only one hemisphere of the brain) that is simple (not resulting in alteration of consciousness) that originates in the occipital lobe. Visual hallucinations are the hallmark of occipital seizures, but are not invariably present. Hallucinations typically commence in the visual field contralateral to the affected visual cortex and then spread to involve the entire visual field. Elementary visual seizures are characterized by fleeting visual manifestations which may be either positive (flashes, phosphenes) or, less commonly, negative (scotoma, hemianopia, amaurosis). Positive phenomena are usually flashes of colour or light, which are simple in shape and may be static or mobile." [PMID:12615636]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000119938 Q9UQK1 / PPP1R3C / protein phosphatase 1 regulatory subunit 3C  / reaction
 ENSG00000111713 GYS2 / P54840 / glycogen synthase 2  / reaction
 ENSG00000056998 GYG2 / O15488 / glycogenin 2  / reaction
 ENSG00000104812 GYS1 / P13807 / glycogen synthase 1  / reaction
 ENSG00000163754 GYG1 / P46976 / glycogenin 1  / reaction
 ENSG00000112425 EPM2A / O95278 / EPM2A, laforin glucan phosphatase  / complex






 

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