ENSG00000164330


Homo sapiens

Features
Gene ID: ENSG00000164330
  
Biological name :EBF1
  
Synonyms : early B cell factor 1 / EBF1 / Q9UH73
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q33.3
Gene start: 158695916
Gene end: 159099761
  
Corresponding Affymetrix probe sets: 227646_at (Human Genome U133 Plus 2.0 Array)   229487_at (Human Genome U133 Plus 2.0 Array)   232204_at (Human Genome U133 Plus 2.0 Array)   233261_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000428020
Ensembl peptide - ENSP00000477809
Ensembl peptide - ENSP00000322898
Ensembl peptide - ENSP00000370029
NCBI entrez gene - 1879     See in Manteia.
OMIM - 164343
RefSeq - XM_017009203
RefSeq - NM_024007
RefSeq - NM_182708
RefSeq - XM_017009192
RefSeq - XM_017009193
RefSeq - XM_017009194
RefSeq - XM_017009195
RefSeq - XM_017009196
RefSeq - XM_017009197
RefSeq - XM_017009198
RefSeq - XM_017009199
RefSeq - XM_017009200
RefSeq - XM_017009201
RefSeq - XM_017009202
RefSeq - NM_001290360
RefSeq - NM_001324101
RefSeq - NM_001324103
RefSeq - NM_001324106
RefSeq - NM_001324107
RefSeq - NM_001324108
RefSeq - NM_001324109
RefSeq - NM_001324111
RefSeq Peptide - NP_001311030
RefSeq Peptide - NP_001311032
RefSeq Peptide - NP_001311035
RefSeq Peptide - NP_001311036
RefSeq Peptide - NP_001311037
RefSeq Peptide - NP_001311038
RefSeq Peptide - NP_001311040
RefSeq Peptide - NP_076870
RefSeq Peptide - NP_874367
RefSeq Peptide - NP_001277289
swissprot - A0A087WTE5
swissprot - E5RFQ1
swissprot - Q9UH73
Ensembl - ENSG00000164330
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ebf1aENSDARG00000099849Danio rerio
 ebf1bENSDARG00000069196Danio rerio
 si:ch211-51e8.2ENSDARG00000092635Danio rerio
 EBF1ENSGALG00000003699Gallus gallus
 Ebf1ENSMUSG00000057098Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
EBF3 / Q9H4W6 / early B cell factor 3ENSG0000010800183
EBF2 / Q9HAK2 / early B cell factor 2ENSG0000022181876
EBF4 / Q9BQW3 / early B cell factor 4ENSG0000008888171


Protein motifs (from Interpro)
Interpro ID Name
 IPR002909  IPT domain
 IPR003523  Transcription factor COE
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR018350  Transcription factor COE, conserved site
 IPR032200  Transcription factor COE, DNA-binding domain
 IPR032201  Transcription factor COE, helix-loop-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA
 molecular_functionGO:0070742 C2H2 zinc finger domain binding IEA


Pathways (from Reactome)
Pathway description
Transcriptional regulation of white adipocyte differentiation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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