ENSG00000165630


Homo sapiens

Features
Gene ID: ENSG00000165630
  
Biological name :PRPF18
  
Synonyms : pre-mRNA processing factor 18 / PRPF18 / Q99633
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: 1
Band: p13
Gene start: 13586927
Gene end: 13630868
  
Corresponding Affymetrix probe sets: 221546_at (Human Genome U133 Plus 2.0 Array)   221547_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000367824
Ensembl peptide - ENSP00000367835
Ensembl peptide - ENSP00000392142
NCBI entrez gene - 8559     See in Manteia.
OMIM - 604993
RefSeq - XM_017016860
RefSeq - NM_003675
RefSeq - XM_011519754
RefSeq Peptide - NP_003666
swissprot - Q5T9P8
swissprot - Q99633
swissprot - Q5T9P7
Ensembl - ENSG00000165630
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prpf18ENSDARG00000058306Danio rerio
 ENSGALG00000043593Gallus gallus
 Prpf18ENSMUSG00000039449Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AL157392.5ENSG0000028224656


Protein motifs (from Interpro)
Interpro ID Name
 IPR004098  Prp18
 IPR014906  Pre-mRNA processing factor 4 (PRP4)-like
 IPR036285  PRP4-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000350 generation of catalytic spliceosome for second transesterification step IBA
 biological_processGO:0006397 mRNA processing TAS
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0071048 nuclear retention of unspliced pre-mRNA at the site of transcription IBA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:0071021 U2-type post-spliceosomal complex IBA
 molecular_functionGO:0000386 second spliceosomal transesterification activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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