ENSG00000166349


Homo sapiens

Features
Gene ID: ENSG00000166349
  
Biological name :RAG1
  
Synonyms : P15918 / RAG1 / recombination activating 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: 1
Band: p12
Gene start: 36510709
Gene end: 36593156
  
Corresponding Affymetrix probe sets: 1554994_at (Human Genome U133 Plus 2.0 Array)   206591_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000299440
Ensembl peptide - ENSP00000434610
NCBI entrez gene - 5896     See in Manteia.
OMIM - 179615
RefSeq - XM_011520250
RefSeq - NM_000448
RefSeq - XM_005253041
RefSeq Peptide - NP_000439
swissprot - P15918
Ensembl - ENSG00000166349
  
Related genetic diseases (OMIM): 233650 - Combined cellular and humoral immune defects with granulomas, 233650
  601457 - Severe combined immunodeficiency, B cell-negative, 601457
  603554 - Omenn syndrome, 603554
  609889 - Alpha/beta T-cell lymphopenia with gamma/delta T-cell expansion, severe cytomegalovirus infection, and autoimmunity, 609889
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rag1ENSDARG00000052122Danio rerio
 RAG1ENSGALG00000007938Gallus gallus
 Rag1ENSMUSG00000061311Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR018957  Zinc finger, C3HC4 RING-type
 IPR019485  V(D)J recombination-activating protein 1, Zinc finger
 IPR023336  RAG nonamer-binding domain
 IPR024627  V(D)J recombination-activating protein 1
 IPR035714  RAG1 importin-binding
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002250 adaptive immune response IEA
 biological_processGO:0002331 pre-B cell allelic exclusion IEA
 biological_processGO:0006310 DNA recombination TAS
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006955 immune response TAS
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0008542 visual learning IEA
 biological_processGO:0010390 histone monoubiquitination IEA
 biological_processGO:0030183 B cell differentiation IEA
 biological_processGO:0033077 T cell differentiation in thymus IEA
 biological_processGO:0033151 V(D)J recombination IMP
 biological_processGO:0043029 T cell homeostasis IEA
 biological_processGO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process IEA
 biological_processGO:0045580 regulation of T cell differentiation IEA
 biological_processGO:0045582 positive regulation of T cell differentiation IEA
 biological_processGO:0048538 thymus development IEA
 biological_processGO:0051865 protein autoubiquitination IEA
 biological_processGO:0070233 negative regulation of T cell apoptotic process IEA
 biological_processGO:0070244 negative regulation of thymocyte apoptotic process IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:2000822 regulation of behavioral fear response IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005654 nucleoplasm TAS
 molecular_functionGO:0003677 DNA binding TAS
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004519 endonuclease activity ISS
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0042393 histone binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding ISS
 molecular_functionGO:0046872 metal ion binding ISS
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA


Pathways (from Reactome)
Pathway description
Interleukin-7 signaling
MAPK6/MAPK4 signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000100 Nephrotic syndrome 
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 HP:0000265 Mastoiditis 
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 HP:0000388 Otitis media 
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 HP:0000509 Conjunctivitis "Inflammation of the conjunctiva." [HPO:curators]
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 HP:0000778 Thymus hypoplasia "Underdevelopment of the thymus." [HPO:curators]
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 HP:0000821 Hypothyroidism 
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0000958 Dry skin 
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 HP:0000969 Edema "An abnormal accumulation of fluid beneath the skin, or in one or more cavities of the body. Edema may be related to one or more of the following factors: 1) increased capillary hydrostatic pressure, 2) decreased osmotic pressure of plasma, 3) decreased tissue tension and lymphatic drainage, 4) increased osmotic pressure of tissue fluids, and 5) increased capillary permeability." [HPO:curators]
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 HP:0000989 Pruritus "Pruritus is an itch or a sensation that makes a person want to scratch. This term refers to an abnormally increased disposition to experience pruritus." [HPO:curators]
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 HP:0001019 Erythroderma "An inflammatory exfoliative dermatosis involving nearly all of the surface of the skin. Erythroderma develops suddenly. A patchy erythema may generalize and spread to affect most of the skin. Scaling may appear in 2-6 days and be accompanied by hot, red, dry skin, malaise, and fever." [HPO:probinson]
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 HP:0001072 Thickened skin 
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 HP:0001287 Meningitis 
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 HP:0001369 Arthritis 
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 HP:0001508 Failure to thrive 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001831 Brachydactyly (feet) 
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 HP:0001873 Thrombocytopenia 
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 HP:0001880 Eosinophilia "Increased count of eosinophile granulocytes in the blood." [HPO:sdoelken]
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 HP:0001890 Autoimmune hemolytic anemia 
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 HP:0001903 Anemia 
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 HP:0001904 Autoimmune neutropenia 
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 HP:0001945 Fever 
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 HP:0002014 Diarrhea 
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 HP:0002028 Chronic diarrhea 
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 HP:0002090 Pneumonia 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002665 Lymphoma "A cancer originating in lymphocytes and presenting as a solid tumor of lymhpoid cells." [HPO:curators]
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 HP:0002716 Lymphadenopathy 
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 HP:0002718 Recurrent bacterial infections 
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 HP:0002841 Fungal infections, recurrent 
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 HP:0002960 Autoimmune disease 
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 HP:0003075 Hypoproteinemia 
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 HP:0003139 Panhypogammaglobulinemia 
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 HP:0003593 Early onset 
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 HP:0004315 Decreased IgG level "An abnormally decreased level of immunoglobulin G in blood." [HPO:probinson]
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 HP:0004332 Abnormality of lymphocytes 
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 HP:0004429 Recurrent viral infections 
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 HP:0004430 Severe combined immunodeficiency "Severe combine immunodeficiency (SCID) is a primary immune deficiency that is characterized by a severe defect in both the T- and B-lymphocyte systems." [HPO:curators]
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 HP:0005365 Absent peripheral blood B cells 
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 HP:0005387 Combined immunodeficiency 
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 HP:0005390 Frequent bacterial, viral, and opportunistic infections 
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 HP:0005403 Reduced number of T cells 
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 HP:0006515 Interstitial pneumonitis 
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 HP:0007549 Desquamation of skin soon after birth 
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 HP:0008866 Failure to thrive secondary to recurrent infections 
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 HP:0010976 Reduction in B cell number "An abnormal decrease from the normal count of `B cells` (CL:0000236)." [HPO:probinson]
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 HP:0100646 Thyroiditis "`Inflammation` (MPATH:212) of the `thyroid gland` (FMA:9603)." [HPO:probinson]
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 HP:0100806 Sepsis 
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 HP:0100840 Aplasia/Hypoplasia of the eyebrow "Absence or underdevelopment of the eyebrow." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000175097 RAG2 / P55895 / recombination activating 2  / complex






 

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