ENSG00000175097


Homo sapiens

Features
Gene ID: ENSG00000175097
  
Biological name :RAG2
  
Synonyms : P55895 / RAG2 / recombination activating 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: p12
Gene start: 36575574
Gene end: 36598279
  
Corresponding Affymetrix probe sets: 215117_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000436327
Ensembl peptide - ENSP00000478672
Ensembl peptide - ENSP00000436895
Ensembl peptide - ENSP00000308620
Ensembl peptide - ENSP00000432174
NCBI entrez gene - 5897     See in Manteia.
OMIM - 179616
RefSeq - NM_000536
RefSeq - NM_001243785
RefSeq - NM_001243786
RefSeq Peptide - NP_001230714
RefSeq Peptide - NP_001230715
RefSeq Peptide - NP_000527
swissprot - P55895
swissprot - E9PPU5
swissprot - E9PQB9
Ensembl - ENSG00000175097
  
Related genetic diseases (OMIM): 233650 - Combined cellular and humoral immune defects with granulomas, 233650
  601457 - Severe combined immunodeficiency, B cell-negative, 601457
  603554 - Omenn syndrome, 603554
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rag2ENSDARG00000052121Danio rerio
 RAG2ENSGALG00000046408Gallus gallus
 Rag2ENSMUSG00000032864Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004321  V-D-J recombination activating protein 2
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR011043  Galactose oxidase/kelch, beta-propeller
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR015915  Kelch-type beta propeller
 IPR025162  Recombination activating protein 2, PHD domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002326 B cell lineage commitment IEA
 biological_processGO:0002331 pre-B cell allelic exclusion IEA
 biological_processGO:0002358 B cell homeostatic proliferation IEA
 biological_processGO:0002360 T cell lineage commitment IEA
 biological_processGO:0006310 DNA recombination IEA
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0030183 B cell differentiation IEA
 biological_processGO:0030217 T cell differentiation IEA
 biological_processGO:0033077 T cell differentiation in thymus IEA
 biological_processGO:0033151 V(D)J recombination IEA
 biological_processGO:0042742 defense response to bacterium IEA
 biological_processGO:0046622 positive regulation of organ growth IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEA
 molecular_functionGO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0035064 methylated histone binding IEA
 molecular_functionGO:0035091 phosphatidylinositol binding IEA
 molecular_functionGO:0043325 phosphatidylinositol-3,4-bisphosphate binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA
 molecular_functionGO:0080025 phosphatidylinositol-3,5-bisphosphate binding IEA


Pathways (from Reactome)
Pathway description
Interleukin-7 signaling
MAPK6/MAPK4 signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000100 Nephrotic syndrome 
Show

 HP:0000265 Mastoiditis 
Show

 HP:0000388 Otitis media 
Show

 HP:0000509 Conjunctivitis "Inflammation of the conjunctiva." [HPO:curators]
Show

 HP:0000778 Thymus hypoplasia "Underdevelopment of the thymus." [HPO:curators]
Show

 HP:0000821 Hypothyroidism 
Show

 HP:0000944 Abnormality of the metaphyses 
Show

 HP:0000958 Dry skin 
Show

 HP:0000969 Edema "An abnormal accumulation of fluid beneath the skin, or in one or more cavities of the body. Edema may be related to one or more of the following factors: 1) increased capillary hydrostatic pressure, 2) decreased osmotic pressure of plasma, 3) decreased tissue tension and lymphatic drainage, 4) increased osmotic pressure of tissue fluids, and 5) increased capillary permeability." [HPO:curators]
Show

 HP:0000989 Pruritus "Pruritus is an itch or a sensation that makes a person want to scratch. This term refers to an abnormally increased disposition to experience pruritus." [HPO:curators]
Show

 HP:0001019 Erythroderma "An inflammatory exfoliative dermatosis involving nearly all of the surface of the skin. Erythroderma develops suddenly. A patchy erythema may generalize and spread to affect most of the skin. Scaling may appear in 2-6 days and be accompanied by hot, red, dry skin, malaise, and fever." [HPO:probinson]
Show

 HP:0001072 Thickened skin 
Show

 HP:0001287 Meningitis 
Show

 HP:0001369 Arthritis 
Show

 HP:0001508 Failure to thrive 
Show

 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
Show

 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
Show

 HP:0001831 Brachydactyly (feet) 
Show

 HP:0001873 Thrombocytopenia 
Show

 HP:0001880 Eosinophilia "Increased count of eosinophile granulocytes in the blood." [HPO:sdoelken]
Show

 HP:0001903 Anemia 
Show

 HP:0001945 Fever 
Show

 HP:0002014 Diarrhea 
Show

 HP:0002028 Chronic diarrhea 
Show

 HP:0002090 Pneumonia 
Show

 HP:0002205 Recurrent respiratory infections 
Show

 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
Show

 HP:0002665 Lymphoma "A cancer originating in lymphocytes and presenting as a solid tumor of lymhpoid cells." [HPO:curators]
Show

 HP:0002716 Lymphadenopathy 
Show

 HP:0002718 Recurrent bacterial infections 
Show

 HP:0002841 Fungal infections, recurrent 
Show

 HP:0002960 Autoimmune disease 
Show

 HP:0003075 Hypoproteinemia 
Show

 HP:0003139 Panhypogammaglobulinemia 
Show

 HP:0003593 Early onset 
Show

 HP:0004315 Decreased IgG level "An abnormally decreased level of immunoglobulin G in blood." [HPO:probinson]
Show

 HP:0004332 Abnormality of lymphocytes 
Show

 HP:0004429 Recurrent viral infections 
Show

 HP:0004430 Severe combined immunodeficiency "Severe combine immunodeficiency (SCID) is a primary immune deficiency that is characterized by a severe defect in both the T- and B-lymphocyte systems." [HPO:curators]
Show

 HP:0005365 Absent peripheral blood B cells 
Show

 HP:0005387 Combined immunodeficiency 
Show

 HP:0005390 Frequent bacterial, viral, and opportunistic infections 
Show

 HP:0005403 Reduced number of T cells 
Show

 HP:0007549 Desquamation of skin soon after birth 
Show

 HP:0008866 Failure to thrive secondary to recurrent infections 
Show

 HP:0010976 Reduction in B cell number "An abnormal decrease from the normal count of `B cells` (CL:0000236)." [HPO:probinson]
Show

 HP:0100646 Thyroiditis "`Inflammation` (MPATH:212) of the `thyroid gland` (FMA:9603)." [HPO:probinson]
Show

 HP:0100806 Sepsis 
Show

 HP:0100840 Aplasia/Hypoplasia of the eyebrow "Absence or underdevelopment of the eyebrow." [HPO:probinson]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000166349 RAG1 / P15918 / recombination activating 1  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr